miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17075 3' -61.1 NC_004333.2 + 25414 0.77 0.059031
Target:  5'- cGCCUGCAGcgugccGGCGGCGgcCGUCACGCCGg -3'
miRNA:   3'- uUGGGCGUC------CUGUCGC--GCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 45020 0.68 0.275571
Target:  5'- --gCCGCucGACcGCGCGUgGCGCUGg -3'
miRNA:   3'- uugGGCGucCUGuCGCGCAgUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 31085 0.67 0.296678
Target:  5'- cGCCUGCAGGuuCGGCGC--CugGCCc -3'
miRNA:   3'- uUGGGCGUCCu-GUCGCGcaGugCGGc -5'
17075 3' -61.1 NC_004333.2 + 28771 0.66 0.384627
Target:  5'- cGACCgCGCGGGucgcgGCGGCGCGacuucccaUCGCGUa- -3'
miRNA:   3'- -UUGG-GCGUCC-----UGUCGCGC--------AGUGCGgc -5'
17075 3' -61.1 NC_004333.2 + 2666 0.71 0.178037
Target:  5'- --gCCGCAacgccGGCAGCuugcaGCGUCGCGCCGg -3'
miRNA:   3'- uugGGCGUc----CUGUCG-----CGCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 46189 0.71 0.178037
Target:  5'- --aCCG-AGGGCugGGCGCGUCucGCGCCGg -3'
miRNA:   3'- uugGGCgUCCUG--UCGCGCAG--UGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 26649 0.7 0.192686
Target:  5'- --gCCGCucGugAGCGUGaUCGCGCCGg -3'
miRNA:   3'- uugGGCGucCugUCGCGC-AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 42669 0.7 0.197799
Target:  5'- cAGCCCGCA--ACAGCGCcgaucGUCuccACGCCGg -3'
miRNA:   3'- -UUGGGCGUccUGUCGCG-----CAG---UGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 37116 0.69 0.219448
Target:  5'- --gCUGCGGGGCgugcucgaAGCGC-UCACGCCGc -3'
miRNA:   3'- uugGGCGUCCUG--------UCGCGcAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 14074 0.68 0.268807
Target:  5'- -gUgCGCAGGcaaagcugauGCAGCGCGaucgUCAUGCCGu -3'
miRNA:   3'- uuGgGCGUCC----------UGUCGCGC----AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 10871 0.69 0.22459
Target:  5'- cGCCgCGCGGGAagaacgcCGGCGCGacagucacUUGCGCCGa -3'
miRNA:   3'- uUGG-GCGUCCU-------GUCGCGC--------AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 22042 0.69 0.217756
Target:  5'- aGAUCaCGCGGGcggacagaucgugcACGGCGCGUaGCGCCa -3'
miRNA:   3'- -UUGG-GCGUCC--------------UGUCGCGCAgUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 23379 0.77 0.064268
Target:  5'- cGCCCGuCAguccGGACAGgGCgGUCACGCCGu -3'
miRNA:   3'- uUGGGC-GU----CCUGUCgCG-CAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 3555 0.69 0.249319
Target:  5'- gGugCCGC---GCAGCGCGUCG-GCCGa -3'
miRNA:   3'- -UugGGCGuccUGUCGCGCAGUgCGGC- -5'
17075 3' -61.1 NC_004333.2 + 47589 0.74 0.109348
Target:  5'- gGACCCGCAGGcguucauucaGCuGCGCGU--CGCCGa -3'
miRNA:   3'- -UUGGGCGUCC----------UGuCGCGCAguGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 37169 0.7 0.20303
Target:  5'- -uCCCGCAGcGCGGCGa--CACGCCGc -3'
miRNA:   3'- uuGGGCGUCcUGUCGCgcaGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 15502 0.68 0.255682
Target:  5'- uGCUCGCGGcggucaccGGCGGCGCGUCAaGCgCGa -3'
miRNA:   3'- uUGGGCGUC--------CUGUCGCGCAGUgCG-GC- -5'
17075 3' -61.1 NC_004333.2 + 13751 0.68 0.289506
Target:  5'- gAGCgCGUAGGACGccGCGCGccgcUCGCGCgGc -3'
miRNA:   3'- -UUGgGCGUCCUGU--CGCGC----AGUGCGgC- -5'
17075 3' -61.1 NC_004333.2 + 33406 0.72 0.151682
Target:  5'- uGCCUGCGGcGCAGCGacugCGCGCCGa -3'
miRNA:   3'- uUGGGCGUCcUGUCGCgca-GUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 682 0.7 0.192686
Target:  5'- uGCCCGUgcucGGugAGCGCGaUCGUGCCGc -3'
miRNA:   3'- uUGGGCGu---CCugUCGCGC-AGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.