miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 22183 0.72 0.26541
Target:  5'- gGCGGccgGCGGCgGUUCGGCGGCUgcggccuGCUCGa -3'
miRNA:   3'- -CGCUa--CGCUG-CGGGCCGCUGA-------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 31230 0.67 0.536736
Target:  5'- cCGGUcGCGACGgCCGcGCGGCgcagcgccguCUCGg -3'
miRNA:   3'- cGCUA-CGCUGCgGGC-CGCUGau--------GAGC- -5'
17080 3' -57.5 NC_004333.2 + 33401 0.68 0.455681
Target:  5'- gGCGAugccUGCGGCGCa--GCGACUGCgCGc -3'
miRNA:   3'- -CGCU----ACGCUGCGggcCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 24281 0.71 0.301156
Target:  5'- cCGAaauUGU--CGCCCGGCGACUGCgCGa -3'
miRNA:   3'- cGCU---ACGcuGCGGGCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 24577 0.66 0.579143
Target:  5'- cGCGGUGUGAUGCUgaaaUGacCGACUAuCUCGg -3'
miRNA:   3'- -CGCUACGCUGCGG----GCc-GCUGAU-GAGC- -5'
17080 3' -57.5 NC_004333.2 + 38234 0.67 0.535689
Target:  5'- uGCGA-GCGGCGUgccaagaUCGGCGGCcgGgUCGg -3'
miRNA:   3'- -CGCUaCGCUGCG-------GGCCGCUGa-UgAGC- -5'
17080 3' -57.5 NC_004333.2 + 14575 0.66 0.60063
Target:  5'- uGCGAUGCGACGUUCaaGGaCGGCcagGCgucCGa -3'
miRNA:   3'- -CGCUACGCUGCGGG--CC-GCUGa--UGa--GC- -5'
17080 3' -57.5 NC_004333.2 + 23047 0.69 0.399432
Target:  5'- gGCGAccgguaccGCGACGCugCCGGCGGCgaacaGCUUGc -3'
miRNA:   3'- -CGCUa-------CGCUGCG--GGCCGCUGa----UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 25961 0.69 0.405764
Target:  5'- gGCGAagcGCGGCGCuuGGCGcucgcgcaccaagcGCUGCUg- -3'
miRNA:   3'- -CGCUa--CGCUGCGggCCGC--------------UGAUGAgc -5'
17080 3' -57.5 NC_004333.2 + 28399 0.69 0.408497
Target:  5'- aCGAUGCGcAUGUUCGGUGAUUACg-- -3'
miRNA:   3'- cGCUACGC-UGCGGGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 46994 0.67 0.536736
Target:  5'- cGCGAggcuucGCGGCGCUcgCGGCG-CUGCa-- -3'
miRNA:   3'- -CGCUa-----CGCUGCGG--GCCGCuGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 23658 0.67 0.547249
Target:  5'- uUGGUGgaUGAUGCUCGGCGGCgGCUUc -3'
miRNA:   3'- cGCUAC--GCUGCGGGCCGCUGaUGAGc -5'
17080 3' -57.5 NC_004333.2 + 6397 0.67 0.547249
Target:  5'- cGCGGUGCGGuCGUCCucaCGGCUGCg-- -3'
miRNA:   3'- -CGCUACGCU-GCGGGcc-GCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 47486 0.66 0.589869
Target:  5'- gGCGAgcgGCGAUGUagCuGCGAUUGCUUGc -3'
miRNA:   3'- -CGCUa--CGCUGCGg-GcCGCUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 3279 0.68 0.475363
Target:  5'- gGCGG-GCGGCGCgCCGGgcCGGCUcaccggccucguGCUCa -3'
miRNA:   3'- -CGCUaCGCUGCG-GGCC--GCUGA------------UGAGc -5'
17080 3' -57.5 NC_004333.2 + 20585 0.68 0.465468
Target:  5'- aGCGA-GCGGCGCggCGGCGGCcgGCagCGg -3'
miRNA:   3'- -CGCUaCGCUGCGg-GCCGCUGa-UGa-GC- -5'
17080 3' -57.5 NC_004333.2 + 32292 0.68 0.465468
Target:  5'- cGCGA-GCucaagaGCUCGGCGACgUGCUCa -3'
miRNA:   3'- -CGCUaCGcug---CGGGCCGCUG-AUGAGc -5'
17080 3' -57.5 NC_004333.2 + 39339 0.68 0.464484
Target:  5'- uGCGAUcGCGcgcgcguGCGCCUGcCGGCcGCUCGg -3'
miRNA:   3'- -CGCUA-CGC-------UGCGGGCcGCUGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 18950 0.68 0.455681
Target:  5'- uCGAUGCGuucuggGCGcCCCGGCGGCaaUGCguugCGc -3'
miRNA:   3'- cGCUACGC------UGC-GGGCCGCUG--AUGa---GC- -5'
17080 3' -57.5 NC_004333.2 + 10016 0.69 0.427008
Target:  5'- uGCGGUuCGACggcaaacaccuGCgCGGCGAcCUGCUCGu -3'
miRNA:   3'- -CGCUAcGCUG-----------CGgGCCGCU-GAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.