miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 20920 0.76 0.145588
Target:  5'- cGCGcaggauUGCaacccGACGCCCGGCGGCUACgccaCGg -3'
miRNA:   3'- -CGCu-----ACG-----CUGCGGGCCGCUGAUGa---GC- -5'
17080 3' -57.5 NC_004333.2 + 45066 0.67 0.533597
Target:  5'- cGCGcgGCcGCGCCCGGgcaagaaaaCGGCggacugcgaggcgaUACUCGa -3'
miRNA:   3'- -CGCuaCGcUGCGGGCC---------GCUG--------------AUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 6837 0.66 0.578073
Target:  5'- gGCGggGCacucgucGGCuaCCGGCGGCUGCg-- -3'
miRNA:   3'- -CGCuaCG-------CUGcgGGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 37692 0.66 0.611416
Target:  5'- cCGGccCGGCGCgUGGCGGCUcaauggccuGCUCGa -3'
miRNA:   3'- cGCUacGCUGCGgGCCGCUGA---------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 24281 0.71 0.301156
Target:  5'- cCGAaauUGU--CGCCCGGCGACUGCgCGa -3'
miRNA:   3'- cGCU---ACGcuGCGGGCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 19490 0.71 0.308586
Target:  5'- uGCGAUcggcGCuGGCGCgCUGGCGGC-GCUCGu -3'
miRNA:   3'- -CGCUA----CG-CUGCG-GGCCGCUGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 39720 0.7 0.381692
Target:  5'- aGCGAccuCGGCaaGCUCGGCaaaGACUGCUCGa -3'
miRNA:   3'- -CGCUac-GCUG--CGGGCCG---CUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 44811 0.7 0.381692
Target:  5'- aCGccGCGACGCUCGGCGAggACa-- -3'
miRNA:   3'- cGCuaCGCUGCGGGCCGCUgaUGagc -5'
17080 3' -57.5 NC_004333.2 + 33401 0.68 0.455681
Target:  5'- gGCGAugccUGCGGCGCa--GCGACUGCgCGc -3'
miRNA:   3'- -CGCU----ACGCUGCGggcCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 44379 0.68 0.495459
Target:  5'- -aGGUGCGcUGCUCGGCGGCgcgUGCgCGg -3'
miRNA:   3'- cgCUACGCuGCGGGCCGCUG---AUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 45972 0.68 0.465468
Target:  5'- gGCGAgGCGugGuguCCCGGCcuGCcACUCGg -3'
miRNA:   3'- -CGCUaCGCugC---GGGCCGc-UGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 25942 0.69 0.41769
Target:  5'- cGCGgcGCGAUG-CCGGCGGCcagUACgCGg -3'
miRNA:   3'- -CGCuaCGCUGCgGGCCGCUG---AUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 8648 0.76 0.157891
Target:  5'- uCGgcGCGGCGCCCGGC--UUGCUCGu -3'
miRNA:   3'- cGCuaCGCUGCGGGCCGcuGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 168 0.68 0.474369
Target:  5'- aCGAU-CGGCGCCUGGCGcgaguccACUGCcCGu -3'
miRNA:   3'- cGCUAcGCUGCGGGCCGC-------UGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 20882 0.74 0.216925
Target:  5'- uGgGcgGCGACgaGCCCGGCGcagcgcguGCUACUUGg -3'
miRNA:   3'- -CgCuaCGCUG--CGGGCCGC--------UGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 20464 0.69 0.405764
Target:  5'- cCGGUcGUGACGCagccgguuagcgucCCGGCGGCUGC-CGc -3'
miRNA:   3'- cGCUA-CGCUGCG--------------GGCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 31132 0.68 0.475363
Target:  5'- cGCGc-GCGA-GCCCGGCGAaUGCaUCGc -3'
miRNA:   3'- -CGCuaCGCUgCGGGCCGCUgAUG-AGC- -5'
17080 3' -57.5 NC_004333.2 + 31230 0.67 0.536736
Target:  5'- cCGGUcGCGACGgCCGcGCGGCgcagcgccguCUCGg -3'
miRNA:   3'- cGCUA-CGCUGCgGGC-CGCUGau--------GAGC- -5'
17080 3' -57.5 NC_004333.2 + 22183 0.72 0.26541
Target:  5'- gGCGGccgGCGGCgGUUCGGCGGCUgcggccuGCUCGa -3'
miRNA:   3'- -CGCUa--CGCUG-CGGGCCGCUGA-------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 30637 0.7 0.373021
Target:  5'- aGCGcgGCaAgGCgCGGCGugcGCUGCUCGa -3'
miRNA:   3'- -CGCuaCGcUgCGgGCCGC---UGAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.