Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17080 | 3' | -57.5 | NC_004333.2 | + | 36388 | 1.11 | 0.00044 |
Target: 5'- gGCGAUGCGACGCCCGGCGACUACUCGg -3' miRNA: 3'- -CGCUACGCUGCGGGCCGCUGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 20920 | 0.76 | 0.145588 |
Target: 5'- cGCGcaggauUGCaacccGACGCCCGGCGGCUACgccaCGg -3' miRNA: 3'- -CGCu-----ACG-----CUGCGGGCCGCUGAUGa---GC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 8648 | 0.76 | 0.157891 |
Target: 5'- uCGgcGCGGCGCCCGGC--UUGCUCGu -3' miRNA: 3'- cGCuaCGCUGCGGGCCGcuGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 13827 | 0.74 | 0.190311 |
Target: 5'- cGCGA-GCGGCGCgCGGCGucCUacgcGCUCGa -3' miRNA: 3'- -CGCUaCGCUGCGgGCCGCu-GA----UGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 29067 | 0.74 | 0.216925 |
Target: 5'- cGCGAUGCGcACGCcgacCCGGCGGCcGCg-- -3' miRNA: 3'- -CGCUACGC-UGCG----GGCCGCUGaUGagc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 20882 | 0.74 | 0.216925 |
Target: 5'- uGgGcgGCGACgaGCCCGGCGcagcgcguGCUACUUGg -3' miRNA: 3'- -CgCuaCGCUG--CGGGCCGC--------UGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 6677 | 0.73 | 0.253 |
Target: 5'- uGCGAcUGCGGCGCUgGGCGGCgcgccgugGCggCGa -3' miRNA: 3'- -CGCU-ACGCUGCGGgCCGCUGa-------UGa-GC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 48174 | 0.72 | 0.259471 |
Target: 5'- cGCGGUGCGcGCGCCCGGUugccGcCUGCgccUCGu -3' miRNA: 3'- -CGCUACGC-UGCGGGCCG----CuGAUG---AGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 22183 | 0.72 | 0.26541 |
Target: 5'- gGCGGccgGCGGCgGUUCGGCGGCUgcggccuGCUCGa -3' miRNA: 3'- -CGCUa--CGCUG-CGGGCCGCUGA-------UGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 24281 | 0.71 | 0.301156 |
Target: 5'- cCGAaauUGU--CGCCCGGCGACUGCgCGa -3' miRNA: 3'- cGCU---ACGcuGCGGGCCGCUGAUGaGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 19490 | 0.71 | 0.308586 |
Target: 5'- uGCGAUcggcGCuGGCGCgCUGGCGGC-GCUCGu -3' miRNA: 3'- -CGCUA----CG-CUGCG-GGCCGCUGaUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 27895 | 0.7 | 0.339697 |
Target: 5'- aGCGAucUGC-ACGCCggcuggcuucgUGGuCGACUACUCGg -3' miRNA: 3'- -CGCU--ACGcUGCGG-----------GCC-GCUGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 9199 | 0.7 | 0.347823 |
Target: 5'- cGCGAcgUGCGuuacgUGCUCGGCGGCgacauugcGCUCGa -3' miRNA: 3'- -CGCU--ACGCu----GCGGGCCGCUGa-------UGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 35222 | 0.7 | 0.364485 |
Target: 5'- gGCGGUGCGAUGUuuuaCCGGCcuucaaacgcGGCaUGCUCa -3' miRNA: 3'- -CGCUACGCUGCG----GGCCG----------CUG-AUGAGc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 30637 | 0.7 | 0.373021 |
Target: 5'- aGCGcgGCaAgGCgCGGCGugcGCUGCUCGa -3' miRNA: 3'- -CGCuaCGcUgCGgGCCGC---UGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 8035 | 0.7 | 0.381692 |
Target: 5'- aCGAagguUGCcACGUauGGCGACUACUCGu -3' miRNA: 3'- cGCU----ACGcUGCGggCCGCUGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 39720 | 0.7 | 0.381692 |
Target: 5'- aGCGAccuCGGCaaGCUCGGCaaaGACUGCUCGa -3' miRNA: 3'- -CGCUac-GCUG--CGGGCCG---CUGAUGAGC- -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 44811 | 0.7 | 0.381692 |
Target: 5'- aCGccGCGACGCUCGGCGAggACa-- -3' miRNA: 3'- cGCuaCGCUGCGGGCCGCUgaUGagc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 38782 | 0.69 | 0.390496 |
Target: 5'- gGUGAagGCGA-GCgCCGGCGGCUGCg-- -3' miRNA: 3'- -CGCUa-CGCUgCG-GGCCGCUGAUGagc -5' |
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17080 | 3' | -57.5 | NC_004333.2 | + | 23047 | 0.69 | 0.399432 |
Target: 5'- gGCGAccgguaccGCGACGCugCCGGCGGCgaacaGCUUGc -3' miRNA: 3'- -CGCUa-------CGCUGCG--GGCCGCUGa----UGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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