miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 3290 0.69 0.277649
Target:  5'- gGCGUCAUcggggcgGgCGGCGCGCCgGGC-CGg -3'
miRNA:   3'- -CGCAGUG-------CgGCCGCGUGGgCUGuGCg -5'
17084 5' -60.3 NC_004333.2 + 3307 0.67 0.407399
Target:  5'- uGCG-CGCGgCGGCGCGCgguugaauuaaacuaUCGcuuCGCGCg -3'
miRNA:   3'- -CGCaGUGCgGCCGCGUG---------------GGCu--GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 3651 0.69 0.285176
Target:  5'- uCGcCGCGaugUGGCGCACuauguggucggCCGACGCGCu -3'
miRNA:   3'- cGCaGUGCg--GCCGCGUG-----------GGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 4260 0.68 0.36099
Target:  5'- cGCG-CACGUUcGUGCGCCCggucGACACGa -3'
miRNA:   3'- -CGCaGUGCGGcCGCGUGGG----CUGUGCg -5'
17084 5' -60.3 NC_004333.2 + 4639 0.66 0.431037
Target:  5'- aGCGccaUCGCGaucaUGGCGacgggcaGgCCGGCGCGCg -3'
miRNA:   3'- -CGC---AGUGCg---GCCGCg------UgGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 4726 0.67 0.403835
Target:  5'- cCG-CGCGCCGGCcUGCCCGu--CGCc -3'
miRNA:   3'- cGCaGUGCGGCCGcGUGGGCuguGCG- -5'
17084 5' -60.3 NC_004333.2 + 4856 0.68 0.34158
Target:  5'- cGCG-CGCGCCGuGCcgaugccGCugCCGccgcugaccauguaGCGCGCg -3'
miRNA:   3'- -CGCaGUGCGGC-CG-------CGugGGC--------------UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 5115 0.69 0.3139
Target:  5'- aCGUCGgccaacaGCCGGC-CGCCUGGC-CGCc -3'
miRNA:   3'- cGCAGUg------CGGCCGcGUGGGCUGuGCG- -5'
17084 5' -60.3 NC_004333.2 + 5533 0.66 0.468916
Target:  5'- -gGUCAUgccgugGCCGGCGacgGCuuGGCGCGa -3'
miRNA:   3'- cgCAGUG------CGGCCGCg--UGggCUGUGCg -5'
17084 5' -60.3 NC_004333.2 + 6462 0.66 0.431037
Target:  5'- gGCGUCAgGUagcaGGCGCAUCaggucuaGGCAguCGCc -3'
miRNA:   3'- -CGCAGUgCGg---CCGCGUGGg------CUGU--GCG- -5'
17084 5' -60.3 NC_004333.2 + 6641 0.77 0.078548
Target:  5'- uCGaUCGCGCuCGGCagcGCGCUCGGCGCGCu -3'
miRNA:   3'- cGC-AGUGCG-GCCG---CGUGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 6671 0.71 0.234021
Target:  5'- uGCGgcgCugGgCGGCGCGCCguggCGGCgAUGCg -3'
miRNA:   3'- -CGCa--GugCgGCCGCGUGG----GCUG-UGCG- -5'
17084 5' -60.3 NC_004333.2 + 6731 0.7 0.265023
Target:  5'- cGCGccugcucgagCGCGCCGagcGCGCugCCGA-GCGCg -3'
miRNA:   3'- -CGCa---------GUGCGGC---CGCGugGGCUgUGCG- -5'
17084 5' -60.3 NC_004333.2 + 6748 0.7 0.265023
Target:  5'- ----aGCGCCacGGCGC-CCCGGuCGCGCg -3'
miRNA:   3'- cgcagUGCGG--CCGCGuGGGCU-GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 6821 0.73 0.150706
Target:  5'- gGCG-CGCGaCCGGgGCGCC-GugGCGCu -3'
miRNA:   3'- -CGCaGUGC-GGCCgCGUGGgCugUGCG- -5'
17084 5' -60.3 NC_004333.2 + 6931 0.67 0.369302
Target:  5'- gGCGU-GCGCgGGCGCcagucgaaGCCUGAaccaucgaGCGCa -3'
miRNA:   3'- -CGCAgUGCGgCCGCG--------UGGGCUg-------UGCG- -5'
17084 5' -60.3 NC_004333.2 + 7621 0.66 0.44034
Target:  5'- uGCGaUUGCGUCuGCaGCACCUGGaacaGCGCg -3'
miRNA:   3'- -CGC-AGUGCGGcCG-CGUGGGCUg---UGCG- -5'
17084 5' -60.3 NC_004333.2 + 7671 0.7 0.27161
Target:  5'- cGCuUCGacUGCCGGCGaACCCGACcACGg -3'
miRNA:   3'- -CGcAGU--GCGGCCGCgUGGGCUG-UGCg -5'
17084 5' -60.3 NC_004333.2 + 7704 0.66 0.478651
Target:  5'- uCGUCGCGCUguuccaGGUGCugCaGACGCa- -3'
miRNA:   3'- cGCAGUGCGG------CCGCGugGgCUGUGcg -5'
17084 5' -60.3 NC_004333.2 + 8297 0.74 0.146757
Target:  5'- cGCG-CGgGCCGGCGUcauCCUGcCGCGCa -3'
miRNA:   3'- -CGCaGUgCGGCCGCGu--GGGCuGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.