miRNA display CGI


Results 1 - 20 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 628 0.7 0.258567
Target:  5'- aGCGg---GCCGGUGCugCCaGugACGCc -3'
miRNA:   3'- -CGCagugCGGCCGCGugGG-CugUGCG- -5'
17084 5' -60.3 NC_004333.2 + 743 0.68 0.329064
Target:  5'- cCGUUGCGCCcuGCaGCACCUGAUAgGUg -3'
miRNA:   3'- cGCAGUGCGGc-CG-CGUGGGCUGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 799 0.69 0.306519
Target:  5'- aGCGUgCcgguCGCCGGCGCAggaCCGAacaGCuGCa -3'
miRNA:   3'- -CGCA-Gu---GCGGCCGCGUg--GGCUg--UG-CG- -5'
17084 5' -60.3 NC_004333.2 + 871 0.78 0.068378
Target:  5'- -gGUCcuGCGCCGGCGa--CCGGCACGCu -3'
miRNA:   3'- cgCAG--UGCGGCCGCgugGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 1259 0.67 0.386314
Target:  5'- gGCaUgACGUgcuccuUGGCGCgccGCCUGGCGCGCg -3'
miRNA:   3'- -CGcAgUGCG------GCCGCG---UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 1354 0.69 0.306519
Target:  5'- cGCGUaacgcaacCGCGCCaggcGGCGCGCCaaggaGCACGUc -3'
miRNA:   3'- -CGCA--------GUGCGG----CCGCGUGGgc---UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 1634 0.7 0.239968
Target:  5'- uGCGUCGuCGgCGGCGUAgcCCUGaAUGCGCu -3'
miRNA:   3'- -CGCAGU-GCgGCCGCGU--GGGC-UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 1848 0.69 0.3139
Target:  5'- aGUGUgCAgGCCGGUGUcgugcgguUCUGACGCGCc -3'
miRNA:   3'- -CGCA-GUgCGGCCGCGu-------GGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 1926 0.71 0.234021
Target:  5'- cGCGUCugcaccaGCUGGCcCGCaCCGGCgACGCg -3'
miRNA:   3'- -CGCAGug-----CGGCCGcGUG-GGCUG-UGCG- -5'
17084 5' -60.3 NC_004333.2 + 1997 0.87 0.016534
Target:  5'- aGCGUUACGCCGGCGCggaugauGCCCGACGucacggcCGCa -3'
miRNA:   3'- -CGCAGUGCGGCCGCG-------UGGGCUGU-------GCG- -5'
17084 5' -60.3 NC_004333.2 + 2007 0.68 0.321415
Target:  5'- cGCGU--CGCCGGUGCggGCCagcuggugcaGACGCGUg -3'
miRNA:   3'- -CGCAguGCGGCCGCG--UGGg---------CUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 2076 0.67 0.369302
Target:  5'- aCGUCgggcaucauccGCGCCGGCGUAacgCUGACGaacuCGCa -3'
miRNA:   3'- cGCAG-----------UGCGGCCGCGUg--GGCUGU----GCG- -5'
17084 5' -60.3 NC_004333.2 + 2278 0.68 0.329064
Target:  5'- cGCGUUugcCGUCGGCaagucguguaccGUGgCCGGCACGCc -3'
miRNA:   3'- -CGCAGu--GCGGCCG------------CGUgGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 2508 0.67 0.395012
Target:  5'- gGUGUU-CGCCGcGcCGUACCaaGGCACGCu -3'
miRNA:   3'- -CGCAGuGCGGC-C-GCGUGGg-CUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 2687 0.9 0.008856
Target:  5'- aGCGUCGCGCCGGCgGCGgCCGACAgGCc -3'
miRNA:   3'- -CGCAGUGCGGCCG-CGUgGGCUGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 2742 0.67 0.377744
Target:  5'- cGCGaCGCugcaagcuGCCGGCGUugCggcUGAUACGCc -3'
miRNA:   3'- -CGCaGUG--------CGGCCGCGugG---GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 2998 0.7 0.239968
Target:  5'- aCG-CuCGCCGGCGCGUCCGccgcgacguaGCGCGCg -3'
miRNA:   3'- cGCaGuGCGGCCGCGUGGGC----------UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 3026 0.73 0.162712
Target:  5'- gGCGUCACGCUcGCGCAgCugcagggcuacagCGGCACGUu -3'
miRNA:   3'- -CGCAGUGCGGcCGCGUgG-------------GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 3073 0.69 0.278327
Target:  5'- aCGUCGCGgCGGaCGCGCC-GGCGaGCg -3'
miRNA:   3'- cGCAGUGCgGCC-GCGUGGgCUGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 3187 0.75 0.121658
Target:  5'- uGCGUgagCACgagGCCGGUGagccgGCCCGGCGCGCc -3'
miRNA:   3'- -CGCA---GUG---CGGCCGCg----UGGGCUGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.