miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 38454 1.13 0.000172
Target:  5'- gGCGUCACGCCGGCGCACCCGACACGCg -3'
miRNA:   3'- -CGCAGUGCGGCCGCGUGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 2687 0.9 0.008856
Target:  5'- aGCGUCGCGCCGGCgGCGgCCGACAgGCc -3'
miRNA:   3'- -CGCAGUGCGGCCG-CGUgGGCUGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 1997 0.87 0.016534
Target:  5'- aGCGUUACGCCGGCGCggaugauGCCCGACGucacggcCGCa -3'
miRNA:   3'- -CGCAGUGCGGCCGCG-------UGGGCUGU-------GCG- -5'
17084 5' -60.3 NC_004333.2 + 42201 0.81 0.044553
Target:  5'- aGCGUCAUGUCgugcaccggcaacuGGCGCACCucgCGACACGCc -3'
miRNA:   3'- -CGCAGUGCGG--------------CCGCGUGG---GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 43129 0.81 0.044931
Target:  5'- gGCGUCACGuUCGGCGUcggugucguagaACUCGACAUGCg -3'
miRNA:   3'- -CGCAGUGC-GGCCGCG------------UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 30051 0.8 0.054693
Target:  5'- cGCGcUCgGCGCCGGUggcagcgcggccGCGCUCGGCACGCg -3'
miRNA:   3'- -CGC-AG-UGCGGCCG------------CGUGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 33296 0.8 0.054693
Target:  5'- cGCGUUGCGUCGGcCGCAUcgagccaaCCGGCGCGCc -3'
miRNA:   3'- -CGCAGUGCGGCC-GCGUG--------GGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 28301 0.79 0.056247
Target:  5'- cGCGUCACGgucaCGuGaCGCGCCCGgACGCGCa -3'
miRNA:   3'- -CGCAGUGCg---GC-C-GCGUGGGC-UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 10947 0.79 0.059482
Target:  5'- cUGUCGCGCCGGCGUucuuCCCG-CGCGg -3'
miRNA:   3'- cGCAGUGCGGCCGCGu---GGGCuGUGCg -5'
17084 5' -60.3 NC_004333.2 + 871 0.78 0.068378
Target:  5'- -gGUCcuGCGCCGGCGa--CCGGCACGCu -3'
miRNA:   3'- cgCAG--UGCGGCCGCgugGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 20660 0.78 0.075772
Target:  5'- -aGcCGCGCCugcagaaacaccacGGCGCgACCCGACGCGCc -3'
miRNA:   3'- cgCaGUGCGG--------------CCGCG-UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 6641 0.77 0.078548
Target:  5'- uCGaUCGCGCuCGGCagcGCGCUCGGCGCGCu -3'
miRNA:   3'- cGC-AGUGCG-GCCG---CGUGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 14264 0.77 0.078548
Target:  5'- uGCGUCAUGCUGcCGCAuCCCGACGaGCg -3'
miRNA:   3'- -CGCAGUGCGGCcGCGU-GGGCUGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 47567 0.77 0.087711
Target:  5'- -gGUCGCGCCGGCcgGCGCCuCGuucaGCGCg -3'
miRNA:   3'- cgCAGUGCGGCCG--CGUGG-GCug--UGCG- -5'
17084 5' -60.3 NC_004333.2 + 10740 0.77 0.087711
Target:  5'- aGCGUgCACcgGCCGGCGCGaCCGugACGUc -3'
miRNA:   3'- -CGCA-GUG--CGGCCGCGUgGGCugUGCG- -5'
17084 5' -60.3 NC_004333.2 + 18258 0.77 0.090156
Target:  5'- cGCG-CACGaCGaGCGCaucACCCGGCACGCc -3'
miRNA:   3'- -CGCaGUGCgGC-CGCG---UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 12378 0.77 0.090156
Target:  5'- aGCGcC-CGCCcGCGCcccGCCCGGCGCGCc -3'
miRNA:   3'- -CGCaGuGCGGcCGCG---UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 17483 0.76 0.095241
Target:  5'- cGCGcUCACGCUGcuCGCACUCGAC-CGCa -3'
miRNA:   3'- -CGC-AGUGCGGCc-GCGUGGGCUGuGCG- -5'
17084 5' -60.3 NC_004333.2 + 30308 0.76 0.097885
Target:  5'- cCGUCGCGCCuGCGacacCACCCGccauACGCGCg -3'
miRNA:   3'- cGCAGUGCGGcCGC----GUGGGC----UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 18620 0.76 0.103381
Target:  5'- cCGcCGCGCCGGCugccGCACCCGGguUGCc -3'
miRNA:   3'- cGCaGUGCGGCCG----CGUGGGCUguGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.