miRNA display CGI


Results 1 - 20 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 2687 0.9 0.008856
Target:  5'- aGCGUCGCGCCGGCgGCGgCCGACAgGCc -3'
miRNA:   3'- -CGCAGUGCGGCCG-CGUgGGCUGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 46771 0.73 0.154752
Target:  5'- aGUGUC-CGCC-GCGCuGCUCGGCACGUc -3'
miRNA:   3'- -CGCAGuGCGGcCGCG-UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 23398 0.73 0.163141
Target:  5'- gGCgGUCACGCCGuacugguaGCCCGGCACGUa -3'
miRNA:   3'- -CG-CAGUGCGGCcgcg----UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 38141 0.66 0.478651
Target:  5'- cGCGUUcgACGCCgacccGGC-CGCCgaucuUGGCACGCc -3'
miRNA:   3'- -CGCAG--UGCGG-----CCGcGUGG-----GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 12378 0.77 0.090156
Target:  5'- aGCGcC-CGCCcGCGCcccGCCCGGCGCGCc -3'
miRNA:   3'- -CGCaGuGCGGcCGCG---UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 17483 0.76 0.095241
Target:  5'- cGCGcUCACGCUGcuCGCACUCGAC-CGCa -3'
miRNA:   3'- -CGC-AGUGCGGCc-GCGUGGGCUGuGCG- -5'
17084 5' -60.3 NC_004333.2 + 28891 0.75 0.112172
Target:  5'- cGCGaUCGCGCuCGGCGCAggCCGGCGCa- -3'
miRNA:   3'- -CGC-AGUGCG-GCCGCGUg-GGCUGUGcg -5'
17084 5' -60.3 NC_004333.2 + 28423 0.75 0.115254
Target:  5'- cGUGUCGCGCCGGUGuCGCgCUGAuuCAUGUa -3'
miRNA:   3'- -CGCAGUGCGGCCGC-GUG-GGCU--GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 17614 0.74 0.128392
Target:  5'- uUGUCaagACGCCGGcCGCGCCCggugccguggccGACACGUu -3'
miRNA:   3'- cGCAG---UGCGGCC-GCGUGGG------------CUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 25437 0.74 0.146757
Target:  5'- cCGUCACGCCgGGCGUGCCgGuuACGa -3'
miRNA:   3'- cGCAGUGCGG-CCGCGUGGgCugUGCg -5'
17084 5' -60.3 NC_004333.2 + 41355 0.74 0.135468
Target:  5'- cGUGUgGCGCuCGaGCacGCGCCCGAC-CGCa -3'
miRNA:   3'- -CGCAgUGCG-GC-CG--CGUGGGCUGuGCG- -5'
17084 5' -60.3 NC_004333.2 + 3187 0.75 0.121658
Target:  5'- uGCGUgagCACgagGCCGGUGagccgGCCCGGCGCGCc -3'
miRNA:   3'- -CGCA---GUG---CGGCCGCg----UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 1997 0.87 0.016534
Target:  5'- aGCGUUACGCCGGCGCggaugauGCCCGACGucacggcCGCa -3'
miRNA:   3'- -CGCAGUGCGGCCGCG-------UGGGCUGU-------GCG- -5'
17084 5' -60.3 NC_004333.2 + 8931 0.74 0.138768
Target:  5'- cGCGgcuucguUCGCGCCGGCGCugUCcauCGCGUg -3'
miRNA:   3'- -CGC-------AGUGCGGCCGCGugGGcu-GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 33296 0.8 0.054693
Target:  5'- cGCGUUGCGUCGGcCGCAUcgagccaaCCGGCGCGCc -3'
miRNA:   3'- -CGCAGUGCGGCC-GCGUG--------GGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 13008 0.75 0.116194
Target:  5'- aCGuUCGCGCCGggcaucaacgccuGCGCgagguccaucaagauGCCCGACACGCu -3'
miRNA:   3'- cGC-AGUGCGGC-------------CGCG---------------UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 11904 0.74 0.139139
Target:  5'- uCGUCGCGgcCCGGCauGCGCagCGGCGCGCg -3'
miRNA:   3'- cGCAGUGC--GGCCG--CGUGg-GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 9730 0.73 0.162712
Target:  5'- aCGcCGCGUCGGCgacaugaGCGCCgGAUGCGCg -3'
miRNA:   3'- cGCaGUGCGGCCG-------CGUGGgCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 6641 0.77 0.078548
Target:  5'- uCGaUCGCGCuCGGCagcGCGCUCGGCGCGCu -3'
miRNA:   3'- cGC-AGUGCG-GCCG---CGUGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 30308 0.76 0.097885
Target:  5'- cCGUCGCGCCuGCGacacCACCCGccauACGCGCg -3'
miRNA:   3'- cGCAGUGCGGcCGC----GUGGGC----UGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.