Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17100 | 3' | -53.6 | NC_004333.2 | + | 46060 | 0.71 | 0.468106 |
Target: 5'- -----cCCUcgGCGCCgAGUgGCAGGCCGg -3' miRNA: 3'- caauuaGGAa-UGCGG-UCG-CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 46093 | 1.09 | 0.001126 |
Target: 5'- cGUUAAUCCUUACGCCAGCGCAGGCCGu -3' miRNA: 3'- -CAAUUAGGAAUGCGGUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 36208 | 0.75 | 0.266835 |
Target: 5'- cGUUGAaggUUGCGCCGgucGCGCAGGCCGu -3' miRNA: 3'- -CAAUUaggAAUGCGGU---CGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 3600 | 0.66 | 0.734016 |
Target: 5'- cGUUGAUCCcgcuUUACGCCgaucAGCcGCAGcaGCUGa -3' miRNA: 3'- -CAAUUAGG----AAUGCGG----UCG-CGUC--CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 8871 | 0.66 | 0.734016 |
Target: 5'- --aGGUCUacaucACGCCGGCGCAaGGCa- -3' miRNA: 3'- caaUUAGGaa---UGCGGUCGCGU-CCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 22067 | 0.66 | 0.727473 |
Target: 5'- -cUGAUUCgcgccgACGCaaagaaaacggcccgCAGUGCGGGCCGu -3' miRNA: 3'- caAUUAGGaa----UGCG---------------GUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 22437 | 0.66 | 0.712068 |
Target: 5'- ---cAUCCUcgGCGCgugCGGCGCAGGUUu -3' miRNA: 3'- caauUAGGAa-UGCG---GUCGCGUCCGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 20978 | 0.67 | 0.689785 |
Target: 5'- --cAAUCCUgcGCGCCAaguagcacGCGCuGcGCCGg -3' miRNA: 3'- caaUUAGGAa-UGCGGU--------CGCGuC-CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 31380 | 0.67 | 0.667267 |
Target: 5'- --gGcgCCgugcucgGCGUCGGCGCAggugcGGCCGg -3' miRNA: 3'- caaUuaGGaa-----UGCGGUCGCGU-----CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 32475 | 0.68 | 0.599228 |
Target: 5'- --------cUGCGCgaGGCGCGGGCCGa -3' miRNA: 3'- caauuaggaAUGCGg-UCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 39774 | 0.69 | 0.575554 |
Target: 5'- --aGGUCgCUUGuCGUCAGUggcgcagGCAGGCCGa -3' miRNA: 3'- caaUUAG-GAAU-GCGGUCG-------CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 33140 | 0.69 | 0.565469 |
Target: 5'- -cUGA-CCgaguUGCCAGCGCucguGGCCGa -3' miRNA: 3'- caAUUaGGaau-GCGGUCGCGu---CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 872 | 0.69 | 0.549878 |
Target: 5'- --cGGUCC-UGCGCCGGCGaccggcacgcucaAGGUCGa -3' miRNA: 3'- caaUUAGGaAUGCGGUCGCg------------UCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 41728 | 0.7 | 0.510456 |
Target: 5'- ----cUCCU--UGCCGGCGUAcGGCCGc -3' miRNA: 3'- caauuAGGAauGCGGUCGCGU-CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 12490 | 0.7 | 0.510456 |
Target: 5'- -----aCC-UACGuCCAGCGCuuGGCCGa -3' miRNA: 3'- caauuaGGaAUGC-GGUCGCGu-CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 17315 | 0.7 | 0.489066 |
Target: 5'- ---cGUCCUcAUGCgCGG-GCAGGCCGg -3' miRNA: 3'- caauUAGGAaUGCG-GUCgCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 7910 | 0.71 | 0.468106 |
Target: 5'- -----------gGCCGGCGCAGGCCGc -3' miRNA: 3'- caauuaggaaugCGGUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 20736 | 0.71 | 0.4578 |
Target: 5'- ---cAUCCcgUGCGCCuccugccacuGGCGCAGcGCCGu -3' miRNA: 3'- caauUAGGa-AUGCGG----------UCGCGUC-CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 2009 | 0.73 | 0.34468 |
Target: 5'- -----cCCgcguCGCCGGUGCGGGCCa -3' miRNA: 3'- caauuaGGaau-GCGGUCGCGUCCGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 27325 | 0.74 | 0.31972 |
Target: 5'- --cAGUCCgaauacgagGCGUCGGCGCAGGCa- -3' miRNA: 3'- caaUUAGGaa-------UGCGGUCGCGUCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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