Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17100 | 3' | -53.6 | NC_004333.2 | + | 15199 | 0.78 | 0.167774 |
Target: 5'- --cAAUCCgcACgGCCGGCaGCAGGCCGg -3' miRNA: 3'- caaUUAGGaaUG-CGGUCG-CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 21166 | 0.68 | 0.633253 |
Target: 5'- -gUGcgCUUcGCGCUGcCGCAGGCCGg -3' miRNA: 3'- caAUuaGGAaUGCGGUcGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 5826 | 0.68 | 0.599228 |
Target: 5'- ---cGUCCUUuuccAUGCCaaugaAGCGCcGGCCGg -3' miRNA: 3'- caauUAGGAA----UGCGG-----UCGCGuCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 12311 | 0.7 | 0.49971 |
Target: 5'- ---cGUCCUgcGCGCCAgccucGCGCGGGuuGa -3' miRNA: 3'- caauUAGGAa-UGCGGU-----CGCGUCCggC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 39784 | 0.71 | 0.447617 |
Target: 5'- --cGAUCCgaccgACGCCGcucGCGCuguGGCCGu -3' miRNA: 3'- caaUUAGGaa---UGCGGU---CGCGu--CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 8954 | 0.71 | 0.437561 |
Target: 5'- ---uGUCCau-CGCguGCGCGGGCUGg -3' miRNA: 3'- caauUAGGaauGCGguCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 3914 | 0.67 | 0.689785 |
Target: 5'- --aGcgCCagGCGgCAGCggcgGCAGGCCGa -3' miRNA: 3'- caaUuaGGaaUGCgGUCG----CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 1995 | 0.67 | 0.689785 |
Target: 5'- -gUAG-CgUUACGCCGGCGCGGaugauGCCc -3' miRNA: 3'- caAUUaGgAAUGCGGUCGCGUC-----CGGc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 13542 | 0.67 | 0.655948 |
Target: 5'- -----gCgUUGcCGCCGGCGgcCAGGCCGg -3' miRNA: 3'- caauuaGgAAU-GCGGUCGC--GUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 35903 | 0.68 | 0.621898 |
Target: 5'- --cAcgCCguuaUACGCCacaucGGCGaCAGGCCGa -3' miRNA: 3'- caaUuaGGa---AUGCGG-----UCGC-GUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 25721 | 0.7 | 0.49971 |
Target: 5'- ------gCUUGCucgccgGCCAGCuGCAGGCCGg -3' miRNA: 3'- caauuagGAAUG------CGGUCG-CGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 28893 | 0.76 | 0.227333 |
Target: 5'- --cGAUC---GCGCuCGGCGCAGGCCGg -3' miRNA: 3'- caaUUAGgaaUGCG-GUCGCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 11234 | 0.67 | 0.68305 |
Target: 5'- ----cUCCUUGCcggcgcucgagugcuGCCAGacggcccaaUGCAGGCCGa -3' miRNA: 3'- caauuAGGAAUG---------------CGGUC---------GCGUCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 795 | 0.76 | 0.233555 |
Target: 5'- cUUGAgcgugCCgguCGCCGGCGCAGGaCCGa -3' miRNA: 3'- cAAUUa----GGaauGCGGUCGCGUCC-GGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 43400 | 0.68 | 0.610553 |
Target: 5'- -aUGGUCCcgcagcCGCCcGCGCAGGCa- -3' miRNA: 3'- caAUUAGGaau---GCGGuCGCGUCCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 9590 | 0.67 | 0.688664 |
Target: 5'- -----aCCUUcaGCGCCAGCcggcgcgGCAucGGCCGg -3' miRNA: 3'- caauuaGGAA--UGCGGUCG-------CGU--CCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 9454 | 0.66 | 0.744834 |
Target: 5'- ---cGUCC-UGCGCaccaGGCGCGGGUg- -3' miRNA: 3'- caauUAGGaAUGCGg---UCGCGUCCGgc -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 22168 | 0.73 | 0.34468 |
Target: 5'- ----cUCCUUGuCGCCGGCGgC-GGCCGg -3' miRNA: 3'- caauuAGGAAU-GCGGUCGC-GuCCGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 5055 | 0.67 | 0.655948 |
Target: 5'- uGUUGG-CCg-ACGUCGGCGCGGcGCUGa -3' miRNA: 3'- -CAAUUaGGaaUGCGGUCGCGUC-CGGC- -5' |
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17100 | 3' | -53.6 | NC_004333.2 | + | 17315 | 0.7 | 0.489066 |
Target: 5'- ---cGUCCUcAUGCgCGG-GCAGGCCGg -3' miRNA: 3'- caauUAGGAaUGCG-GUCgCGUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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