miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17100 3' -53.6 NC_004333.2 + 46093 1.09 0.001126
Target:  5'- cGUUAAUCCUUACGCCAGCGCAGGCCGu -3'
miRNA:   3'- -CAAUUAGGAAUGCGGUCGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 15199 0.78 0.167774
Target:  5'- --cAAUCCgcACgGCCGGCaGCAGGCCGg -3'
miRNA:   3'- caaUUAGGaaUG-CGGUCG-CGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 28893 0.76 0.227333
Target:  5'- --cGAUC---GCGCuCGGCGCAGGCCGg -3'
miRNA:   3'- caaUUAGgaaUGCG-GUCGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 795 0.76 0.233555
Target:  5'- cUUGAgcgugCCgguCGCCGGCGCAGGaCCGa -3'
miRNA:   3'- cAAUUa----GGaauGCGGUCGCGUCC-GGC- -5'
17100 3' -53.6 NC_004333.2 + 36208 0.75 0.266835
Target:  5'- cGUUGAaggUUGCGCCGgucGCGCAGGCCGu -3'
miRNA:   3'- -CAAUUaggAAUGCGGU---CGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 27325 0.74 0.31972
Target:  5'- --cAGUCCgaauacgagGCGUCGGCGCAGGCa- -3'
miRNA:   3'- caaUUAGGaa-------UGCGGUCGCGUCCGgc -5'
17100 3' -53.6 NC_004333.2 + 22168 0.73 0.34468
Target:  5'- ----cUCCUUGuCGCCGGCGgC-GGCCGg -3'
miRNA:   3'- caauuAGGAAU-GCGGUCGC-GuCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 2009 0.73 0.34468
Target:  5'- -----cCCgcguCGCCGGUGCGGGCCa -3'
miRNA:   3'- caauuaGGaau-GCGGUCGCGUCCGGc -5'
17100 3' -53.6 NC_004333.2 + 8954 0.71 0.437561
Target:  5'- ---uGUCCau-CGCguGCGCGGGCUGg -3'
miRNA:   3'- caauUAGGaauGCGguCGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 39784 0.71 0.447617
Target:  5'- --cGAUCCgaccgACGCCGcucGCGCuguGGCCGu -3'
miRNA:   3'- caaUUAGGaa---UGCGGU---CGCGu--CCGGC- -5'
17100 3' -53.6 NC_004333.2 + 20736 0.71 0.4578
Target:  5'- ---cAUCCcgUGCGCCuccugccacuGGCGCAGcGCCGu -3'
miRNA:   3'- caauUAGGa-AUGCGG----------UCGCGUC-CGGC- -5'
17100 3' -53.6 NC_004333.2 + 7910 0.71 0.468106
Target:  5'- -----------gGCCGGCGCAGGCCGc -3'
miRNA:   3'- caauuaggaaugCGGUCGCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 46060 0.71 0.468106
Target:  5'- -----cCCUcgGCGCCgAGUgGCAGGCCGg -3'
miRNA:   3'- caauuaGGAa-UGCGG-UCG-CGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 17315 0.7 0.489066
Target:  5'- ---cGUCCUcAUGCgCGG-GCAGGCCGg -3'
miRNA:   3'- caauUAGGAaUGCG-GUCgCGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 12311 0.7 0.49971
Target:  5'- ---cGUCCUgcGCGCCAgccucGCGCGGGuuGa -3'
miRNA:   3'- caauUAGGAa-UGCGGU-----CGCGUCCggC- -5'
17100 3' -53.6 NC_004333.2 + 25721 0.7 0.49971
Target:  5'- ------gCUUGCucgccgGCCAGCuGCAGGCCGg -3'
miRNA:   3'- caauuagGAAUG------CGGUCG-CGUCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 12490 0.7 0.510456
Target:  5'- -----aCC-UACGuCCAGCGCuuGGCCGa -3'
miRNA:   3'- caauuaGGaAUGC-GGUCGCGu-CCGGC- -5'
17100 3' -53.6 NC_004333.2 + 41728 0.7 0.510456
Target:  5'- ----cUCCU--UGCCGGCGUAcGGCCGc -3'
miRNA:   3'- caauuAGGAauGCGGUCGCGU-CCGGC- -5'
17100 3' -53.6 NC_004333.2 + 872 0.69 0.549878
Target:  5'- --cGGUCC-UGCGCCGGCGaccggcacgcucaAGGUCGa -3'
miRNA:   3'- caaUUAGGaAUGCGGUCGCg------------UCCGGC- -5'
17100 3' -53.6 NC_004333.2 + 33140 0.69 0.565469
Target:  5'- -cUGA-CCgaguUGCCAGCGCucguGGCCGa -3'
miRNA:   3'- caAUUaGGaau-GCGGUCGCGu---CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.