miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17108 5' -57.3 NC_004333.2 + 1570 1.1 0.000459
Target:  5'- cGGCCGACAACGUGCCGUCGAUGCCCAu -3'
miRNA:   3'- -CCGGCUGUUGCACGGCAGCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 28909 0.79 0.098264
Target:  5'- aGGCCGGCGcauACuUGCCGUCGGUGCgUAg -3'
miRNA:   3'- -CCGGCUGU---UGcACGGCAGCUACGgGU- -5'
17108 5' -57.3 NC_004333.2 + 26676 0.76 0.137174
Target:  5'- uGCCGAUAGCGUcaggucGCCagguguauggauGUCGAUGCCCGc -3'
miRNA:   3'- cCGGCUGUUGCA------CGG------------CAGCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 11710 0.74 0.194895
Target:  5'- cGCCgGGCGGCGUGCUGgcguccugcgCGAUGUCCGg -3'
miRNA:   3'- cCGG-CUGUUGCACGGCa---------GCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 18578 0.74 0.205469
Target:  5'- aGGCCGcuGCAGCGU-CCGUCGGcgUGCCg- -3'
miRNA:   3'- -CCGGC--UGUUGCAcGGCAGCU--ACGGgu -5'
17108 5' -57.3 NC_004333.2 + 47316 0.73 0.216536
Target:  5'- cGGCUGAC--UGUGCUG-CGAUGCUCAa -3'
miRNA:   3'- -CCGGCUGuuGCACGGCaGCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 5490 0.73 0.216536
Target:  5'- uGCCGACGACGcUGCCG-CGAUGgCa- -3'
miRNA:   3'- cCGGCUGUUGC-ACGGCaGCUACgGgu -5'
17108 5' -57.3 NC_004333.2 + 22185 0.73 0.21881
Target:  5'- cGGCCGGCGGCGguucggcggcugcgGCCugcUCGAUGCCgAg -3'
miRNA:   3'- -CCGGCUGUUGCa-------------CGGc--AGCUACGGgU- -5'
17108 5' -57.3 NC_004333.2 + 11878 0.73 0.222259
Target:  5'- cGGCCGAaacgGGCGcgagcaccuUGUCGUCGcgGCCCGg -3'
miRNA:   3'- -CCGGCUg---UUGC---------ACGGCAGCuaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 40980 0.73 0.240202
Target:  5'- gGGCCguucGACuuCGUGCuCGUCGAcgaaGCCCAc -3'
miRNA:   3'- -CCGG----CUGuuGCACG-GCAGCUa---CGGGU- -5'
17108 5' -57.3 NC_004333.2 + 43296 0.73 0.246446
Target:  5'- cGGCCGGCuaugcgcuCGUGCCGaUCGA-GCCg- -3'
miRNA:   3'- -CCGGCUGuu------GCACGGC-AGCUaCGGgu -5'
17108 5' -57.3 NC_004333.2 + 27389 0.73 0.246446
Target:  5'- cGGCgCGACGGcCGUGCCGUCauguuUGCCg- -3'
miRNA:   3'- -CCG-GCUGUU-GCACGGCAGcu---ACGGgu -5'
17108 5' -57.3 NC_004333.2 + 45220 0.72 0.259338
Target:  5'- -cCCGGCcACGUGCuUGUCGGUGCCg- -3'
miRNA:   3'- ccGGCUGuUGCACG-GCAGCUACGGgu -5'
17108 5' -57.3 NC_004333.2 + 18810 0.72 0.259338
Target:  5'- cGGCCG-CAgggcGCGUGCUGcuaUCGAaGCCCGc -3'
miRNA:   3'- -CCGGCuGU----UGCACGGC---AGCUaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 17297 0.72 0.286765
Target:  5'- cGGCCGGCGcaGCGU-CC-UCGAcaUGCCCGa -3'
miRNA:   3'- -CCGGCUGU--UGCAcGGcAGCU--ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 36913 0.72 0.286765
Target:  5'- gGGuuGAUAGCG-GCCGgCGAUGgCCGu -3'
miRNA:   3'- -CCggCUGUUGCaCGGCaGCUACgGGU- -5'
17108 5' -57.3 NC_004333.2 + 8421 0.71 0.293969
Target:  5'- cGCCGAUAcgGUGCCGcCGAcguugaucUGCCCGg -3'
miRNA:   3'- cCGGCUGUugCACGGCaGCU--------ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 48125 0.71 0.301314
Target:  5'- cGCCGGCAugGUGaCCGUCGAaugGUUgAa -3'
miRNA:   3'- cCGGCUGUugCAC-GGCAGCUa--CGGgU- -5'
17108 5' -57.3 NC_004333.2 + 29977 0.71 0.301314
Target:  5'- cGGCCGAgGA--UGCCGcgCGcgGCCCGa -3'
miRNA:   3'- -CCGGCUgUUgcACGGCa-GCuaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 15617 0.71 0.308799
Target:  5'- cGCC-ACGAUGggGCUGcUCGAUGCCCGc -3'
miRNA:   3'- cCGGcUGUUGCa-CGGC-AGCUACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.