miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17108 5' -57.3 NC_004333.2 + 622 0.66 0.570845
Target:  5'- -cCCGACAGCGgGCCGgugcugccagUGAcGCCCGu -3'
miRNA:   3'- ccGGCUGUUGCaCGGCa---------GCUaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 938 0.67 0.517882
Target:  5'- cGCCaACGGCGUcGUC-UCGGUGCCUAu -3'
miRNA:   3'- cCGGcUGUUGCA-CGGcAGCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 1525 0.67 0.517882
Target:  5'- cGGCCuGCAGCGUGaUCGUCaGcgGCaCCu -3'
miRNA:   3'- -CCGGcUGUUGCAC-GGCAG-CuaCG-GGu -5'
17108 5' -57.3 NC_004333.2 + 1570 1.1 0.000459
Target:  5'- cGGCCGACAACGUGCCGUCGAUGCCCAu -3'
miRNA:   3'- -CCGGCUGUUGCACGGCAGCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 2194 0.67 0.538863
Target:  5'- cGCCGaguuGCAACGcGCCGaguucgaggCGAUGCUCGc -3'
miRNA:   3'- cCGGC----UGUUGCaCGGCa--------GCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 2413 0.67 0.549462
Target:  5'- aGCUGcGCAACG-GCCGcaCGGUGCUCGc -3'
miRNA:   3'- cCGGC-UGUUGCaCGGCa-GCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 2694 0.69 0.425359
Target:  5'- cGCCGGCGGCG-GCCGacaggccgaucucgUCGGcgaaguuguucgUGCCCGu -3'
miRNA:   3'- cCGGCUGUUGCaCGGC--------------AGCU------------ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 3044 0.68 0.437713
Target:  5'- cGuaCGGCAGCuGgccGCCGUugaCGAUGCCCGg -3'
miRNA:   3'- -CcgGCUGUUG-Ca--CGGCA---GCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 4844 0.69 0.418793
Target:  5'- cGGCUGACcguacgcGCGcGCCGUgcCGAUGCCg- -3'
miRNA:   3'- -CCGGCUGu------UGCaCGGCA--GCUACGGgu -5'
17108 5' -57.3 NC_004333.2 + 5189 0.67 0.528334
Target:  5'- cGGaCGACAAUGUGCUGcgCGAgcUGUUCAa -3'
miRNA:   3'- -CCgGCUGUUGCACGGCa-GCU--ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 5336 0.67 0.507514
Target:  5'- cGCUGGau-CGUcacgccGCCGUgGAUGCCCGg -3'
miRNA:   3'- cCGGCUguuGCA------CGGCAgCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 5490 0.73 0.216536
Target:  5'- uGCCGACGACGcUGCCG-CGAUGgCa- -3'
miRNA:   3'- cCGGCUGUUGC-ACGGCaGCUACgGgu -5'
17108 5' -57.3 NC_004333.2 + 7796 0.66 0.570845
Target:  5'- cGGCCuGAuCAACGauCCGUCGcUGUCCGc -3'
miRNA:   3'- -CCGG-CU-GUUGCacGGCAGCuACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 8100 0.66 0.581614
Target:  5'- gGGUCGACGuag-GUCGUCagguaguucggGAUGCCCGa -3'
miRNA:   3'- -CCGGCUGUugcaCGGCAG-----------CUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 8223 0.66 0.569771
Target:  5'- cGGCCGACcuguCGccacaccUGUCGUCGAcggGCUCGu -3'
miRNA:   3'- -CCGGCUGuu--GC-------ACGGCAGCUa--CGGGU- -5'
17108 5' -57.3 NC_004333.2 + 8421 0.71 0.293969
Target:  5'- cGCCGAUAcgGUGCCGcCGAcguugaucUGCCCGg -3'
miRNA:   3'- cCGGCUGUugCACGGCaGCU--------ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 8649 0.67 0.55372
Target:  5'- cGGCgCGGCGcccggcuugcucgugACgGUGCCGUCGgcGUUCAg -3'
miRNA:   3'- -CCG-GCUGU---------------UG-CACGGCAGCuaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 9800 0.69 0.400379
Target:  5'- aGCCGuCAucCG-GCCGUCGuAUGCCUg -3'
miRNA:   3'- cCGGCuGUu-GCaCGGCAGC-UACGGGu -5'
17108 5' -57.3 NC_004333.2 + 10056 0.67 0.507514
Target:  5'- --aCGACuucAGCGUGUCGg-GAUGCCCGa -3'
miRNA:   3'- ccgGCUG---UUGCACGGCagCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 11710 0.74 0.194895
Target:  5'- cGCCgGGCGGCGUGCUGgcguccugcgCGAUGUCCGg -3'
miRNA:   3'- cCGG-CUGUUGCACGGCa---------GCUACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.