miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17113 5' -66 NC_004333.2 + 20509 0.68 0.174783
Target:  5'- cCGCUGCCgGCCgCCGcc-GCGCCGcucgcuGGCg -3'
miRNA:   3'- -GCGGCGGgCGG-GGCuacUGCGGC------CCG- -5'
17113 5' -66 NC_004333.2 + 41832 0.68 0.174783
Target:  5'- aCGgCGCCCGgCCgCGA--GCgGUCGGGCa -3'
miRNA:   3'- -GCgGCGGGCgGG-GCUacUG-CGGCCCG- -5'
17113 5' -66 NC_004333.2 + 23666 0.7 0.125167
Target:  5'- aCGCCGCCgGCCuCCGGcggcugcaucGugGCCGG-Cg -3'
miRNA:   3'- -GCGGCGGgCGG-GGCUa---------CugCGGCCcG- -5'
17113 5' -66 NC_004333.2 + 38622 0.72 0.08888
Target:  5'- cCGCUGCCCGUggugCCCGuucUGAUcgGCCcGGGCg -3'
miRNA:   3'- -GCGGCGGGCG----GGGCu--ACUG--CGG-CCCG- -5'
17113 5' -66 NC_004333.2 + 25181 0.66 0.241179
Target:  5'- uGCCGCCgCGUCUCGAacuCGCUGcGCg -3'
miRNA:   3'- gCGGCGG-GCGGGGCUacuGCGGCcCG- -5'
17113 5' -66 NC_004333.2 + 12379 0.67 0.203139
Target:  5'- gCGcCCGCCCgcGCCCCGcccggcgcgccaGUGuCGCCGccuucGGCc -3'
miRNA:   3'- -GC-GGCGGG--CGGGGC------------UACuGCGGC-----CCG- -5'
17113 5' -66 NC_004333.2 + 25410 0.68 0.166144
Target:  5'- aGCgCGCCUGCagcgugCCGgcGgcggccgucACGCCGGGCg -3'
miRNA:   3'- gCG-GCGGGCGg-----GGCuaC---------UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 29048 0.72 0.08888
Target:  5'- -aCCGCgCCGCCCaCGAUcGCGCCGaguuGGCg -3'
miRNA:   3'- gcGGCG-GGCGGG-GCUAcUGCGGC----CCG- -5'
17113 5' -66 NC_004333.2 + 29976 0.67 0.19815
Target:  5'- gGCCGCgCUGCCaCCG---GCGCCGaGCg -3'
miRNA:   3'- gCGGCG-GGCGG-GGCuacUGCGGCcCG- -5'
17113 5' -66 NC_004333.2 + 43410 0.72 0.07989
Target:  5'- aGCCGCCCGCgCaggcaGACGCuCGGGUc -3'
miRNA:   3'- gCGGCGGGCGgGgcua-CUGCG-GCCCG- -5'
17113 5' -66 NC_004333.2 + 43251 0.68 0.170415
Target:  5'- gCGCCGCauCUGCCagugagaCGggGGCGCaagGGGCg -3'
miRNA:   3'- -GCGGCG--GGCGGg------GCuaCUGCGg--CCCG- -5'
17113 5' -66 NC_004333.2 + 23018 0.68 0.1788
Target:  5'- aCGCCGCCCGCCugcacugCCGucaGCGUCuGGUu -3'
miRNA:   3'- -GCGGCGGGCGG-------GGCuacUGCGGcCCG- -5'
17113 5' -66 NC_004333.2 + 8217 0.69 0.153903
Target:  5'- aCGCUGCgCGgCagGAUGACGCCGGcccGCg -3'
miRNA:   3'- -GCGGCGgGCgGggCUACUGCGGCC---CG- -5'
17113 5' -66 NC_004333.2 + 36300 0.69 0.135309
Target:  5'- gCGauaCGCgCCG-CCCGAguaGuCGCCGGGCg -3'
miRNA:   3'- -GCg--GCG-GGCgGGGCUa--CuGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 17622 0.71 0.104186
Target:  5'- aCGCCGgCCGCgCCCGGU---GCCGuGGCc -3'
miRNA:   3'- -GCGGCgGGCG-GGGCUAcugCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 851 0.72 0.091032
Target:  5'- uGCCGCCCuggGCCauaggcaCCGAgacGACGCCGuuGGCg -3'
miRNA:   3'- gCGGCGGG---CGG-------GGCUa--CUGCGGC--CCG- -5'
17113 5' -66 NC_004333.2 + 38149 0.66 0.247075
Target:  5'- aCGCCGaCCCgGCCgCCGAucuUGgcACGCCGcucgcaauGGCc -3'
miRNA:   3'- -GCGGC-GGG-CGG-GGCU---AC--UGCGGC--------CCG- -5'
17113 5' -66 NC_004333.2 + 30149 0.66 0.241179
Target:  5'- gGCCG-CCGCCUuuCGuguUGuACGCCgaGGGCa -3'
miRNA:   3'- gCGGCgGGCGGG--GCu--AC-UGCGG--CCCG- -5'
17113 5' -66 NC_004333.2 + 28924 0.66 0.224194
Target:  5'- uGCCGUCgGUgCguaGcgGGCGCCGaGGCa -3'
miRNA:   3'- gCGGCGGgCGgGg--CuaCUGCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 37186 0.67 0.215028
Target:  5'- aCGCCGCUcacgacgCGCgCCGGUgccgaguuccgccgcGACGCUGuGGCc -3'
miRNA:   3'- -GCGGCGG-------GCGgGGCUA---------------CUGCGGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.