miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17113 5' -66 NC_004333.2 + 3220 1.1 0.000076
Target:  5'- gCGCCGCCCGCCCCGAUGACGCCGGGCa -3'
miRNA:   3'- -GCGGCGGGCGGGGCUACUGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 17180 0.69 0.146202
Target:  5'- gGCCGCUgcgaGCCCCGAucUGuuuauCGUcgCGGGCg -3'
miRNA:   3'- gCGGCGGg---CGGGGCU--ACu----GCG--GCCCG- -5'
17113 5' -66 NC_004333.2 + 25410 0.68 0.166144
Target:  5'- aGCgCGCCUGCagcgugCCGgcGgcggccgucACGCCGGGCg -3'
miRNA:   3'- gCG-GCGGGCGg-----GGCuaC---------UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 22629 0.66 0.253089
Target:  5'- gCGCCuGUgCGCUggaUGAUGACGCCcaGGCa -3'
miRNA:   3'- -GCGG-CGgGCGGg--GCUACUGCGGc-CCG- -5'
17113 5' -66 NC_004333.2 + 24261 0.73 0.071773
Target:  5'- uGCCGCCCGUcgaaaagaaCCCGAaauUGuCGCCcGGCg -3'
miRNA:   3'- gCGGCGGGCG---------GGGCU---ACuGCGGcCCG- -5'
17113 5' -66 NC_004333.2 + 43410 0.72 0.07989
Target:  5'- aGCCGCCCGCgCaggcaGACGCuCGGGUc -3'
miRNA:   3'- gCGGCGGGCGgGgcua-CUGCG-GCCCG- -5'
17113 5' -66 NC_004333.2 + 38622 0.72 0.08888
Target:  5'- cCGCUGCCCGUggugCCCGuucUGAUcgGCCcGGGCg -3'
miRNA:   3'- -GCGGCGGGCG----GGGCu--ACUG--CGG-CCCG- -5'
17113 5' -66 NC_004333.2 + 851 0.72 0.091032
Target:  5'- uGCCGCCCuggGCCauaggcaCCGAgacGACGCCGuuGGCg -3'
miRNA:   3'- gCGGCGGG---CGG-------GGCUa--CUGCGGC--CCG- -5'
17113 5' -66 NC_004333.2 + 17622 0.71 0.104186
Target:  5'- aCGCCGgCCGCgCCCGGU---GCCGuGGCc -3'
miRNA:   3'- -GCGGCgGGCG-GGGCUAcugCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 23432 0.69 0.138855
Target:  5'- cCGCCGCCgGCCggaUCGGUcGACGUauCGGGg -3'
miRNA:   3'- -GCGGCGGgCGG---GGCUA-CUGCG--GCCCg -5'
17113 5' -66 NC_004333.2 + 1938 0.7 0.115734
Target:  5'- aGCUgGCCCGCaCCGgcGACGC-GGGCc -3'
miRNA:   3'- gCGG-CGGGCGgGGCuaCUGCGgCCCG- -5'
17113 5' -66 NC_004333.2 + 38876 0.71 0.101205
Target:  5'- aCGCCGCCCGUCCgCGcacccGCGCCGcuucgcgcugaucGGCa -3'
miRNA:   3'- -GCGGCGGGCGGG-GCuac--UGCGGC-------------CCG- -5'
17113 5' -66 NC_004333.2 + 19913 0.75 0.046566
Target:  5'- gCGCCGUCCGCaucaUCGAcGacgagcGCGCCGGGCg -3'
miRNA:   3'- -GCGGCGGGCGg---GGCUaC------UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 23666 0.7 0.125167
Target:  5'- aCGCCGCCgGCCuCCGGcggcugcaucGugGCCGG-Cg -3'
miRNA:   3'- -GCGGCGGgCGG-GGCUa---------CugCGGCCcG- -5'
17113 5' -66 NC_004333.2 + 31155 0.75 0.053195
Target:  5'- uCGCCGCCCGCCuuGGcauCGCCGcccagacGGCg -3'
miRNA:   3'- -GCGGCGGGCGGggCUacuGCGGC-------CCG- -5'
17113 5' -66 NC_004333.2 + 11040 0.71 0.096246
Target:  5'- uCGCCaaGCgCGCCCgGGUcgaauucucGAcCGCCGGGCg -3'
miRNA:   3'- -GCGG--CGgGCGGGgCUA---------CU-GCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 36300 0.69 0.135309
Target:  5'- gCGauaCGCgCCG-CCCGAguaGuCGCCGGGCg -3'
miRNA:   3'- -GCg--GCG-GGCgGGGCUa--CuGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 8217 0.69 0.153903
Target:  5'- aCGCUGCgCGgCagGAUGACGCCGGcccGCg -3'
miRNA:   3'- -GCGGCGgGCgGggCUACUGCGGCC---CG- -5'
17113 5' -66 NC_004333.2 + 707 0.75 0.054805
Target:  5'- uGCCG-CCGCCCgCGA--GCGCCGuGGCg -3'
miRNA:   3'- gCGGCgGGCGGG-GCUacUGCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 29048 0.72 0.08888
Target:  5'- -aCCGCgCCGCCCaCGAUcGCGCCGaguuGGCg -3'
miRNA:   3'- gcGGCG-GGCGGG-GCUAcUGCGGC----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.