miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17113 5' -66 NC_004333.2 + 707 0.75 0.054805
Target:  5'- uGCCG-CCGCCCgCGA--GCGCCGuGGCg -3'
miRNA:   3'- gCGGCgGGCGGG-GCUacUGCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 851 0.72 0.091032
Target:  5'- uGCCGCCCuggGCCauaggcaCCGAgacGACGCCGuuGGCg -3'
miRNA:   3'- gCGGCGGG---CGG-------GGCUa--CUGCGGC--CCG- -5'
17113 5' -66 NC_004333.2 + 1938 0.7 0.115734
Target:  5'- aGCUgGCCCGCaCCGgcGACGC-GGGCc -3'
miRNA:   3'- gCGG-CGGGCGgGGCuaCUGCGgCCCG- -5'
17113 5' -66 NC_004333.2 + 3220 1.1 0.000076
Target:  5'- gCGCCGCCCGCCCCGAUGACGCCGGGCa -3'
miRNA:   3'- -GCGGCGGGCGGGGCUACUGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 3298 0.68 0.179252
Target:  5'- uGCUGCCCGgCgucaUCGggGcgggcggcGCGCCGGGCc -3'
miRNA:   3'- gCGGCGGGCgG----GGCuaC--------UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 3995 0.68 0.179252
Target:  5'- uGCCggucgGCCUGCCgCCGcUGcCGCCuGGCg -3'
miRNA:   3'- gCGG-----CGGGCGG-GGCuACuGCGGcCCG- -5'
17113 5' -66 NC_004333.2 + 4383 0.68 0.164882
Target:  5'- aCGCgGCgCGauuacgcaggugaaCCCgGAUGA-GCCGGGCa -3'
miRNA:   3'- -GCGgCGgGC--------------GGGgCUACUgCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 4722 0.67 0.202635
Target:  5'- gCGCCgGCCUGCCCgucgccaugaucgCGAUGGCGCUcaauuacGGUa -3'
miRNA:   3'- -GCGG-CGGGCGGG-------------GCUACUGCGGc------CCG- -5'
17113 5' -66 NC_004333.2 + 5446 0.67 0.188021
Target:  5'- aCGCCGgcuucaaCCCGaucgaCCCGAaGAauCCGGGCa -3'
miRNA:   3'- -GCGGC-------GGGCg----GGGCUaCUgcGGCCCG- -5'
17113 5' -66 NC_004333.2 + 6912 0.67 0.212918
Target:  5'- aGCCGCCgguagccgacgagUGCCCCGccggaGUGcCGCCGuugcgacaGGCg -3'
miRNA:   3'- gCGGCGG-------------GCGGGGC-----UACuGCGGC--------CCG- -5'
17113 5' -66 NC_004333.2 + 7777 0.75 0.050522
Target:  5'- uCGCUGUCCGCgCCGAUcaccgcuacGACGCCGuGGUc -3'
miRNA:   3'- -GCGGCGGGCGgGGCUA---------CUGCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 8217 0.69 0.153903
Target:  5'- aCGCUGCgCGgCagGAUGACGCCGGcccGCg -3'
miRNA:   3'- -GCGGCGgGCgGggCUACUGCGGCC---CG- -5'
17113 5' -66 NC_004333.2 + 8542 0.66 0.253089
Target:  5'- uCGCCGUCgCGagguacgaaaaUCCUGugggacgugGugGCCGGGCa -3'
miRNA:   3'- -GCGGCGG-GC-----------GGGGCua-------CugCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 8736 0.67 0.19815
Target:  5'- aCGCCGacggcaCCGUCaCGAgcaaGCCGGGCg -3'
miRNA:   3'- -GCGGCg-----GGCGGgGCUacugCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 9032 0.67 0.208236
Target:  5'- cCGCacgauccaGCCCGCgCaCgCGAUGgacaGCGCCGGcGCg -3'
miRNA:   3'- -GCGg-------CGGGCG-G-G-GCUAC----UGCGGCC-CG- -5'
17113 5' -66 NC_004333.2 + 9693 0.69 0.138496
Target:  5'- gCGCCGCCggcaGCCggugcgcaaccggCCGAUGccGCGCCGGcugGCg -3'
miRNA:   3'- -GCGGCGGg---CGG-------------GGCUAC--UGCGGCC---CG- -5'
17113 5' -66 NC_004333.2 + 9821 0.67 0.19815
Target:  5'- uGCCuGCCCGUCCgCGucgccUGAgCGCaugaCGGGCa -3'
miRNA:   3'- gCGG-CGGGCGGG-GCu----ACU-GCG----GCCCG- -5'
17113 5' -66 NC_004333.2 + 11040 0.71 0.096246
Target:  5'- uCGCCaaGCgCGCCCgGGUcgaauucucGAcCGCCGGGCg -3'
miRNA:   3'- -GCGG--CGgGCGGGgCUA---------CU-GCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 11134 0.68 0.16197
Target:  5'- gGCCGCaCGCCCggCGGUcgagaauucGAC-CCGGGCg -3'
miRNA:   3'- gCGGCGgGCGGG--GCUA---------CUGcGGCCCG- -5'
17113 5' -66 NC_004333.2 + 11985 0.68 0.174783
Target:  5'- gCGCgCGCgCCGCUgCGc--AUGCCGGGCc -3'
miRNA:   3'- -GCG-GCG-GGCGGgGCuacUGCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.