Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17113 | 5' | -66 | NC_004333.2 | + | 3220 | 1.1 | 0.000076 |
Target: 5'- gCGCCGCCCGCCCCGAUGACGCCGGGCa -3' miRNA: 3'- -GCGGCGGGCGGGGCUACUGCGGCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 19913 | 0.75 | 0.046566 |
Target: 5'- gCGCCGUCCGCaucaUCGAcGacgagcGCGCCGGGCg -3' miRNA: 3'- -GCGGCGGGCGg---GGCUaC------UGCGGCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 7777 | 0.75 | 0.050522 |
Target: 5'- uCGCUGUCCGCgCCGAUcaccgcuacGACGCCGuGGUc -3' miRNA: 3'- -GCGGCGGGCGgGGCUA---------CUGCGGC-CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 31155 | 0.75 | 0.053195 |
Target: 5'- uCGCCGCCCGCCuuGGcauCGCCGcccagacGGCg -3' miRNA: 3'- -GCGGCGGGCGGggCUacuGCGGC-------CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 707 | 0.75 | 0.054805 |
Target: 5'- uGCCG-CCGCCCgCGA--GCGCCGuGGCg -3' miRNA: 3'- gCGGCgGGCGGG-GCUacUGCGGC-CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 18674 | 0.73 | 0.069871 |
Target: 5'- uGCCGCCCGCgCCUGcc-GCGCCGGuCg -3' miRNA: 3'- gCGGCGGGCG-GGGCuacUGCGGCCcG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 24261 | 0.73 | 0.071773 |
Target: 5'- uGCCGCCCGUcgaaaagaaCCCGAaauUGuCGCCcGGCg -3' miRNA: 3'- gCGGCGGGCG---------GGGCU---ACuGCGGcCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 21032 | 0.73 | 0.071773 |
Target: 5'- gCGCCGCgcgcguuugcguCCgGCCCCG-UGGCguagccGCCGGGCg -3' miRNA: 3'- -GCGGCG------------GG-CGGGGCuACUG------CGGCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 43410 | 0.72 | 0.07989 |
Target: 5'- aGCCGCCCGCgCaggcaGACGCuCGGGUc -3' miRNA: 3'- gCGGCGGGCGgGgcua-CUGCG-GCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 43049 | 0.72 | 0.084271 |
Target: 5'- gCGCCGCCCGCUcguCCGccGGCGa-GGGUg -3' miRNA: 3'- -GCGGCGGGCGG---GGCuaCUGCggCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 29048 | 0.72 | 0.08888 |
Target: 5'- -aCCGCgCCGCCCaCGAUcGCGCCGaguuGGCg -3' miRNA: 3'- gcGGCG-GGCGGG-GCUAcUGCGGC----CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 38622 | 0.72 | 0.08888 |
Target: 5'- cCGCUGCCCGUggugCCCGuucUGAUcgGCCcGGGCg -3' miRNA: 3'- -GCGGCGGGCG----GGGCu--ACUG--CGG-CCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 851 | 0.72 | 0.091032 |
Target: 5'- uGCCGCCCuggGCCauaggcaCCGAgacGACGCCGuuGGCg -3' miRNA: 3'- gCGGCGGG---CGG-------GGCUa--CUGCGGC--CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 11040 | 0.71 | 0.096246 |
Target: 5'- uCGCCaaGCgCGCCCgGGUcgaauucucGAcCGCCGGGCg -3' miRNA: 3'- -GCGG--CGgGCGGGgCUA---------CU-GCGGCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 38876 | 0.71 | 0.101205 |
Target: 5'- aCGCCGCCCGUCCgCGcacccGCGCCGcuucgcgcugaucGGCa -3' miRNA: 3'- -GCGGCGGGCGGG-GCuac--UGCGGC-------------CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 17622 | 0.71 | 0.104186 |
Target: 5'- aCGCCGgCCGCgCCCGGU---GCCGuGGCc -3' miRNA: 3'- -GCGGCgGGCG-GGGCUAcugCGGC-CCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 45019 | 0.71 | 0.106967 |
Target: 5'- gGCCGCUCGaCCgCGcGUGGCGCUGGcgGCg -3' miRNA: 3'- gCGGCGGGC-GGgGC-UACUGCGGCC--CG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 37759 | 0.71 | 0.109818 |
Target: 5'- aGCCGCCaCGCgCCGGgccGGCcgacgagcggGUCGGGCg -3' miRNA: 3'- gCGGCGG-GCGgGGCUa--CUG----------CGGCCCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 40102 | 0.71 | 0.109818 |
Target: 5'- aGgCGUCCGCgCCG-UGGCGCCGcGCg -3' miRNA: 3'- gCgGCGGGCGgGGCuACUGCGGCcCG- -5' |
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17113 | 5' | -66 | NC_004333.2 | + | 1938 | 0.7 | 0.115734 |
Target: 5'- aGCUgGCCCGCaCCGgcGACGC-GGGCc -3' miRNA: 3'- gCGG-CGGGCGgGGCuaCUGCGgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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