Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 37176 | 0.66 | 0.851731 |
Target: 5'- --cACGCCCCGcagcugcccGACGUccucgaUAGCGCGAa- -3' miRNA: 3'- ccaUGCGGGGC---------UUGCA------AUCGUGUUca -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 41322 | 0.66 | 0.860349 |
Target: 5'- cGGcGCGCgaUGGACGUgacGCGCGAGUg -3' miRNA: 3'- -CCaUGCGggGCUUGCAau-CGUGUUCA- -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 9514 | 0.66 | 0.868713 |
Target: 5'- uGGUGCGCaggacggcgaaCCGGACGgcguGCGCAGc- -3' miRNA: 3'- -CCAUGCGg----------GGCUUGCaau-CGUGUUca -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 20237 | 0.66 | 0.868713 |
Target: 5'- uGUGCG-CCCGAGcCGgcGGC-CGAGUa -3' miRNA: 3'- cCAUGCgGGGCUU-GCaaUCGuGUUCA- -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 5532 | 0.66 | 0.868713 |
Target: 5'- aGGUcAUGCCguggCCGGcgACGgcuUGGCGCGAGUg -3' miRNA: 3'- -CCA-UGCGG----GGCU--UGCa--AUCGUGUUCA- -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 46816 | 0.66 | 0.871986 |
Target: 5'- cGUGCGCaacaCGAACGUgcucggcaucgaacGGCACAAGc -3' miRNA: 3'- cCAUGCGgg--GCUUGCAa-------------UCGUGUUCa -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 648 | 0.66 | 0.876816 |
Target: 5'- --gACGCCCgUGAACGUgaaaCGCAAGg -3' miRNA: 3'- ccaUGCGGG-GCUUGCAauc-GUGUUCa -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 33689 | 0.66 | 0.884649 |
Target: 5'- --gACGCCCCcuGCGguagaUGGUACAAGc -3' miRNA: 3'- ccaUGCGGGGcuUGCa----AUCGUGUUCa -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 41939 | 0.66 | 0.884649 |
Target: 5'- gGGUGCGgcuaCCUGAACGacgcugAGCACAu-- -3' miRNA: 3'- -CCAUGCg---GGGCUUGCaa----UCGUGUuca -5' |
|||||||
17120 | 5' | -51.5 | NC_004333.2 | + | 39879 | 0.66 | 0.892206 |
Target: 5'- gGGUAUGCgcgUUCGGACGgccacAGCGCGAGc -3' miRNA: 3'- -CCAUGCG---GGGCUUGCaa---UCGUGUUCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home