Results 21 - 40 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17137 | 5' | -55.4 | NC_004333.2 | + | 11888 | 0.71 | 0.372589 |
Target: 5'- gGGCGCGAGcaccuuguCGuCGCGGCC--CGGCa -3' miRNA: 3'- -UCGCGUUCau------GCuGCGCCGGuaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 38301 | 0.72 | 0.322079 |
Target: 5'- cGCGCGAccGUGC-ACGCGGCgAcCGGCg -3' miRNA: 3'- uCGCGUU--CAUGcUGCGCCGgUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 33348 | 0.74 | 0.256221 |
Target: 5'- uGCGCGAGaACGGCGCG-CCGUCGu- -3' miRNA: 3'- uCGCGUUCaUGCUGCGCcGGUAGUcg -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 5558 | 0.78 | 0.124982 |
Target: 5'- uGGCGCGAGUGCagaccguucagcucGAuugUGCGGCCAUCGGg -3' miRNA: 3'- -UCGCGUUCAUG--------------CU---GCGCCGGUAGUCg -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 6567 | 0.69 | 0.503107 |
Target: 5'- cGGCGCGcGUACG-CGCGaaagcccgcaucgccGCCA-CGGCg -3' miRNA: 3'- -UCGCGUuCAUGCuGCGC---------------CGGUaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 19502 | 0.7 | 0.418613 |
Target: 5'- uGGCGCGcugGCGGCGCucguGGCCGUaugGGCa -3' miRNA: 3'- -UCGCGUucaUGCUGCG----CCGGUAg--UCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 32283 | 0.72 | 0.313392 |
Target: 5'- uGGCGCGGGUcgGCGGCGauGUCgacgugcGUCAGCa -3' miRNA: 3'- -UCGCGUUCA--UGCUGCgcCGG-------UAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 10200 | 0.81 | 0.086885 |
Target: 5'- cGCGCAc--GCGcAUGCGGCCGUCGGCa -3' miRNA: 3'- uCGCGUucaUGC-UGCGCCGGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 41437 | 0.7 | 0.409133 |
Target: 5'- aGGCGCugcu-CGACGCGGgCgaGUCGGCc -3' miRNA: 3'- -UCGCGuucauGCUGCGCCgG--UAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 27878 | 0.85 | 0.046991 |
Target: 5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3' miRNA: 3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 11974 | 0.72 | 0.314174 |
Target: 5'- cGCGCGucgACGAuCGCGGCCGUaucGCg -3' miRNA: 3'- uCGCGUucaUGCU-GCGCCGGUAgu-CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 25522 | 0.71 | 0.372589 |
Target: 5'- gAGCGCGucuuGGUACG-CGCcGCUcgagGUCAGCg -3' miRNA: 3'- -UCGCGU----UCAUGCuGCGcCGG----UAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 10747 | 0.73 | 0.284031 |
Target: 5'- cGGCGUAucGUACcGCGCGGCC--CGGCg -3' miRNA: 3'- -UCGCGUu-CAUGcUGCGCCGGuaGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 29786 | 0.73 | 0.269838 |
Target: 5'- uGGCGCGGGUcguucGCGACGaCGGUCAcCGGg -3' miRNA: 3'- -UCGCGUUCA-----UGCUGC-GCCGGUaGUCg -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 31082 | 0.75 | 0.201812 |
Target: 5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3' miRNA: 3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 19863 | 0.76 | 0.170889 |
Target: 5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3' miRNA: 3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 46945 | 0.68 | 0.520059 |
Target: 5'- cGCGCAGccaagGCGGCGCGcGCCGacgacaAGCa -3' miRNA: 3'- uCGCGUUca---UGCUGCGC-CGGUag----UCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 21210 | 0.68 | 0.509436 |
Target: 5'- uGCGCAucaAUGG-GCGGCCGUCGcGCg -3' miRNA: 3'- uCGCGUucaUGCUgCGCCGGUAGU-CG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 32134 | 0.69 | 0.467926 |
Target: 5'- aAGCGCcAGcACGucgaACGCGGCgacuGUCGGCa -3' miRNA: 3'- -UCGCGuUCaUGC----UGCGCCGg---UAGUCG- -5' |
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17137 | 5' | -55.4 | NC_004333.2 | + | 32751 | 0.7 | 0.418613 |
Target: 5'- cGCGCAGGU-CGcugcCGcCGGCCAUaAGCg -3' miRNA: 3'- uCGCGUUCAuGCu---GC-GCCGGUAgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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