miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 11802 1.12 0.000441
Target:  5'- gAGCGCAAGUACGACGCGGCCAUCAGCg -3'
miRNA:   3'- -UCGCGUUCAUGCUGCGCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 32283 0.72 0.313392
Target:  5'- uGGCGCGGGUcgGCGGCGauGUCgacgugcGUCAGCa -3'
miRNA:   3'- -UCGCGUUCA--UGCUGCgcCGG-------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38301 0.72 0.322079
Target:  5'- cGCGCGAccGUGC-ACGCGGCgAcCGGCg -3'
miRNA:   3'- uCGCGUU--CAUGcUGCGCCGgUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27299 0.66 0.685268
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 19863 0.76 0.170889
Target:  5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 15280 0.76 0.17136
Target:  5'- cGUGCugcgGCGGCGCGGUCAgcaUCAGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31082 0.75 0.201812
Target:  5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28903 0.74 0.243173
Target:  5'- cGGCGCAGGc-CGGCGCauacuuGCCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCauGCUGCGc-----CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 29786 0.73 0.269838
Target:  5'- uGGCGCGGGUcguucGCGACGaCGGUCAcCGGg -3'
miRNA:   3'- -UCGCGUUCA-----UGCUGC-GCCGGUaGUCg -5'
17137 5' -55.4 NC_004333.2 + 25409 0.72 0.306418
Target:  5'- gAGCGCGccugcagcGUGcCGGCgGCGGCCGUCAcGCc -3'
miRNA:   3'- -UCGCGUu-------CAU-GCUG-CGCCGGUAGU-CG- -5'
17137 5' -55.4 NC_004333.2 + 29997 0.73 0.276862
Target:  5'- gAGCGCGAGcaccaUGCGGCGCcGCuCGUCGGg -3'
miRNA:   3'- -UCGCGUUC-----AUGCUGCGcCG-GUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 33348 0.74 0.256221
Target:  5'- uGCGCGAGaACGGCGCG-CCGUCGu- -3'
miRNA:   3'- uCGCGUUCaUGCUGCGCcGGUAGUcg -5'
17137 5' -55.4 NC_004333.2 + 27878 0.85 0.046991
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10747 0.73 0.284031
Target:  5'- cGGCGUAucGUACcGCGCGGCC--CGGCg -3'
miRNA:   3'- -UCGCGUu-CAUGcUGCGCCGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10200 0.81 0.086885
Target:  5'- cGCGCAc--GCGcAUGCGGCCGUCGGCa -3'
miRNA:   3'- uCGCGUucaUGC-UGCGCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9595 0.74 0.249627
Target:  5'- cAGCGCcAGc-CGGCGCGGC-AUCGGCc -3'
miRNA:   3'- -UCGCGuUCauGCUGCGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19634 0.73 0.284031
Target:  5'- gAGCGCGGc--CGACGCuGGCCGUCAacaGCu -3'
miRNA:   3'- -UCGCGUUcauGCUGCG-CCGGUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 11974 0.72 0.314174
Target:  5'- cGCGCGucgACGAuCGCGGCCGUaucGCg -3'
miRNA:   3'- uCGCGUucaUGCU-GCGCCGGUAgu-CG- -5'
17137 5' -55.4 NC_004333.2 + 5558 0.78 0.124982
Target:  5'- uGGCGCGAGUGCagaccguucagcucGAuugUGCGGCCAUCGGg -3'
miRNA:   3'- -UCGCGUUCAUG--------------CU---GCGCCGGUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 1506 0.75 0.201812
Target:  5'- uGCGCGAGcgACGGCGaguCGGCCugcagcgugaucGUCAGCg -3'
miRNA:   3'- uCGCGUUCa-UGCUGC---GCCGG------------UAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.