miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 1506 0.75 0.201812
Target:  5'- uGCGCGAGcgACGGCGaguCGGCCugcagcgugaucGUCAGCg -3'
miRNA:   3'- uCGCGUUCa-UGCUGC---GCCGG------------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2109 0.68 0.558961
Target:  5'- cGCGCGGGcgucgacgugauCGAUGCGGCCgugacGUCGGg -3'
miRNA:   3'- uCGCGUUCau----------GCUGCGCCGG-----UAGUCg -5'
17137 5' -55.4 NC_004333.2 + 2270 0.67 0.585348
Target:  5'- gAGCGCA---GCG-CGUuuGCCGUCGGCa -3'
miRNA:   3'- -UCGCGUucaUGCuGCGc-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2358 0.68 0.563338
Target:  5'- uGCGCAgcuggaAGUugauCGACGCGGCg--UAGCc -3'
miRNA:   3'- uCGCGU------UCAu---GCUGCGCCGguaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2431 0.71 0.355169
Target:  5'- cAGCGUgccuuGGUACGGCGCGGCgAaCAccuGCg -3'
miRNA:   3'- -UCGCGu----UCAUGCUGCGCCGgUaGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 2514 0.66 0.640911
Target:  5'- cGCGCAGGUGuuCGcCGCG-CCGUaccaaGGCa -3'
miRNA:   3'- uCGCGUUCAU--GCuGCGCcGGUAg----UCG- -5'
17137 5' -55.4 NC_004333.2 + 3533 0.67 0.578725
Target:  5'- cGGCGUAaagcgggaucaacgcGGUGCcGCGCaGCgCGUCGGCc -3'
miRNA:   3'- -UCGCGU---------------UCAUGcUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 4673 0.67 0.585348
Target:  5'- cGCGCGGGUcuuucuucAgGAU-CGaGCCAUCGGCg -3'
miRNA:   3'- uCGCGUUCA--------UgCUGcGC-CGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 4954 0.7 0.428224
Target:  5'- cAGCGCGcgcuacauGGUcagcgGCGGCaGCGGC-AUCGGCa -3'
miRNA:   3'- -UCGCGU--------UCA-----UGCUG-CGCCGgUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 5058 0.68 0.530767
Target:  5'- uGGC-CGAcGU-CGGCGCGGCgcugaacagCGUCAGCa -3'
miRNA:   3'- -UCGcGUU-CAuGCUGCGCCG---------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 5128 0.72 0.346676
Target:  5'- cAGCGCcgcgcCGACGuCGGCCAaCAGCc -3'
miRNA:   3'- -UCGCGuucauGCUGC-GCCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 5558 0.78 0.124982
Target:  5'- uGGCGCGAGUGCagaccguucagcucGAuugUGCGGCCAUCGGg -3'
miRNA:   3'- -UCGCGUUCAUG--------------CU---GCGCCGGUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 5640 0.69 0.47098
Target:  5'- cGCGCAccaugccguuaccGGUuuucuucuucgacuCGACuGCGGCCAUguGCa -3'
miRNA:   3'- uCGCGU-------------UCAu-------------GCUG-CGCCGGUAguCG- -5'
17137 5' -55.4 NC_004333.2 + 6415 0.66 0.685268
Target:  5'- cGGCGCAucGUaaaaucgcGCGGUGCGGUCGUCcucacGGCu -3'
miRNA:   3'- -UCGCGUu-CA--------UGCUGCGCCGGUAG-----UCG- -5'
17137 5' -55.4 NC_004333.2 + 6567 0.69 0.503107
Target:  5'- cGGCGCGcGUACG-CGCGaaagcccgcaucgccGCCA-CGGCg -3'
miRNA:   3'- -UCGCGUuCAUGCuGCGC---------------CGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 6669 0.7 0.437964
Target:  5'- cGGCGCuGG-GCGGCGCG-CCGUggCGGCg -3'
miRNA:   3'- -UCGCGuUCaUGCUGCGCcGGUA--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 6705 0.66 0.663149
Target:  5'- gGGCGCAuugGCGACGa-GCCAUgCGuGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCgcCGGUA-GU-CG- -5'
17137 5' -55.4 NC_004333.2 + 8084 0.67 0.585348
Target:  5'- aGGCGacuGG-ACGACGCuGGUCG-CGGCg -3'
miRNA:   3'- -UCGCgu-UCaUGCUGCG-CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 8223 0.67 0.607518
Target:  5'- cGCgGCAGG-AUGACGcCGGCCcgC-GCg -3'
miRNA:   3'- uCG-CGUUCaUGCUGC-GCCGGuaGuCG- -5'
17137 5' -55.4 NC_004333.2 + 8633 0.67 0.607518
Target:  5'- uGCGCGAcGUcgagcuCGGCGCGGCgccCGGCu -3'
miRNA:   3'- uCGCGUU-CAu-----GCUGCGCCGguaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.