miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 27299 0.66 0.685268
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5'
17137 5' -55.4 NC_004333.2 + 48177 0.66 0.648703
Target:  5'- cGGCGC-GGUGCGcGCGCccGGUugccgccugcgccuCGUCGGCa -3'
miRNA:   3'- -UCGCGuUCAUGC-UGCG--CCG--------------GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31460 0.66 0.642025
Target:  5'- cGCGCAAGaaggaguucgaugagACGaaacGCGCGGCUGcgucgcUCGGCa -3'
miRNA:   3'- uCGCGUUCa--------------UGC----UGCGCCGGU------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33673 0.66 0.640911
Target:  5'- gAGCGUAucUGCGACaugggacaGCGGCU-UCGGCu -3'
miRNA:   3'- -UCGCGUucAUGCUG--------CGCCGGuAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 42556 0.66 0.640911
Target:  5'- cAGCGCAu---CaGCGCGGCUAuuuUCGGUg -3'
miRNA:   3'- -UCGCGUucauGcUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 2514 0.66 0.640911
Target:  5'- cGCGCAGGUGuuCGcCGCG-CCGUaccaaGGCa -3'
miRNA:   3'- uCGCGUUCAU--GCuGCGCcGGUAg----UCG- -5'
17137 5' -55.4 NC_004333.2 + 30294 0.66 0.629775
Target:  5'- cGCGCGGcGcGCGAUcgaucaggcaGCGGCUAUCAcgGCa -3'
miRNA:   3'- uCGCGUU-CaUGCUG----------CGCCGGUAGU--CG- -5'
17137 5' -55.4 NC_004333.2 + 8702 0.66 0.629775
Target:  5'- cGCGcCGAGcuCGACGUcGCgCAUCGGCu -3'
miRNA:   3'- uCGC-GUUCauGCUGCGcCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 9896 0.66 0.629775
Target:  5'- uGCGCucagGCGACGCGGaCGggcaGGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCgGUag--UCG- -5'
17137 5' -55.4 NC_004333.2 + 18095 0.66 0.65204
Target:  5'- cAGCGCGuAGaacuCGGC-CGGCUucGUCGGCu -3'
miRNA:   3'- -UCGCGU-UCau--GCUGcGCCGG--UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10812 0.66 0.65204
Target:  5'- cGCGC-GGUACGAuaCGCcGCCAgUCGGg -3'
miRNA:   3'- uCGCGuUCAUGCU--GCGcCGGU-AGUCg -5'
17137 5' -55.4 NC_004333.2 + 40862 0.66 0.663149
Target:  5'- cGGgGCGAGcgacAUGACGCGuGCCugCGGCc -3'
miRNA:   3'- -UCgCGUUCa---UGCUGCGC-CGGuaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10052 0.66 0.685268
Target:  5'- cGCGCAaagAGUACGuCgGCGGU--UCGGUa -3'
miRNA:   3'- uCGCGU---UCAUGCuG-CGCCGguAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 22771 0.66 0.674229
Target:  5'- aGGCGCAucuGUcAUGA-GUGGCaCGUCGGUu -3'
miRNA:   3'- -UCGCGUu--CA-UGCUgCGCCG-GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 22873 0.66 0.674229
Target:  5'- cAGCGCGacgaacaccuGGUACGcaacgUGCGGCgCAUCGaacGCa -3'
miRNA:   3'- -UCGCGU----------UCAUGCu----GCGCCG-GUAGU---CG- -5'
17137 5' -55.4 NC_004333.2 + 39331 0.66 0.674229
Target:  5'- cGCGCGcGUGCGccuGC-CGGCCGcUCGGg -3'
miRNA:   3'- uCGCGUuCAUGC---UGcGCCGGU-AGUCg -5'
17137 5' -55.4 NC_004333.2 + 23487 0.66 0.674229
Target:  5'- cGGCgGCGGGUACG-UGCcgGGCUAcCAGUa -3'
miRNA:   3'- -UCG-CGUUCAUGCuGCG--CCGGUaGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28201 0.66 0.674229
Target:  5'- cGGCGCGcAGUACGgaaACGCGcGCguugagauuuUCGGCg -3'
miRNA:   3'- -UCGCGU-UCAUGC---UGCGC-CGgu--------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 28529 0.66 0.670909
Target:  5'- uGGCGCGcGUAacugGCGGCCcgacaaguacaugaAUCAGCg -3'
miRNA:   3'- -UCGCGUuCAUgcugCGCCGG--------------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 38076 0.66 0.663149
Target:  5'- cGGCGCAcuggaAGccgaGCGACGCGGgCAgu-GCu -3'
miRNA:   3'- -UCGCGU-----UCa---UGCUGCGCCgGUaguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.