miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17137 5' -55.4 NC_004333.2 + 11802 1.12 0.000441
Target:  5'- gAGCGCAAGUACGACGCGGCCAUCAGCg -3'
miRNA:   3'- -UCGCGUUCAUGCUGCGCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 27878 0.85 0.046991
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 10200 0.81 0.086885
Target:  5'- cGCGCAc--GCGcAUGCGGCCGUCGGCa -3'
miRNA:   3'- uCGCGUucaUGC-UGCGCCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31363 0.8 0.103269
Target:  5'- cGGCGCAGGUGCGGC-CGGUCucgcCGGCa -3'
miRNA:   3'- -UCGCGUUCAUGCUGcGCCGGua--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 5558 0.78 0.124982
Target:  5'- uGGCGCGAGUGCagaccguucagcucGAuugUGCGGCCAUCGGg -3'
miRNA:   3'- -UCGCGUUCAUG--------------CU---GCGCCGGUAGUCg -5'
17137 5' -55.4 NC_004333.2 + 30045 0.78 0.141074
Target:  5'- cGGCGCcGGUgGCaGCGCGGCCGcgcUCGGCa -3'
miRNA:   3'- -UCGCGuUCA-UGcUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 31257 0.78 0.141074
Target:  5'- cGGCGUugucGAGUACGGCGCG-CCGUCugGGCg -3'
miRNA:   3'- -UCGCG----UUCAUGCUGCGCcGGUAG--UCG- -5'
17137 5' -55.4 NC_004333.2 + 26911 0.77 0.157289
Target:  5'- gAGCGCGAcgcgacagcacucGcUACGACGCugcaggccgGGCCGUCGGCa -3'
miRNA:   3'- -UCGCGUU-------------C-AUGCUGCG---------CCGGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 43519 0.77 0.166702
Target:  5'- cGCGCAAGcGCGcgauGCGCGcGuCCGUCAGCc -3'
miRNA:   3'- uCGCGUUCaUGC----UGCGC-C-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 19863 0.76 0.170889
Target:  5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5'
17137 5' -55.4 NC_004333.2 + 30172 0.76 0.17136
Target:  5'- uGCGCGGGUcgcgcauCGACGCGuuCCGUCGGCg -3'
miRNA:   3'- uCGCGUUCAu------GCUGCGCc-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 15280 0.76 0.17136
Target:  5'- cGUGCugcgGCGGCGCGGUCAgcaUCAGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCGGU---AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 21968 0.76 0.191171
Target:  5'- uAGCGCAAGaACGGCGCccaauuggGGCUAUgcgCAGCg -3'
miRNA:   3'- -UCGCGUUCaUGCUGCG--------CCGGUA---GUCG- -5'
17137 5' -55.4 NC_004333.2 + 31082 0.75 0.201812
Target:  5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 1506 0.75 0.201812
Target:  5'- uGCGCGAGcgACGGCGaguCGGCCugcagcgugaucGUCAGCg -3'
miRNA:   3'- uCGCGUUCa-UGCUGC---GCCGG------------UAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 33380 0.75 0.209564
Target:  5'- uGGCGCGccGGUuggcuCGAUGCGGCCGacgcaacgcgcgcgcUCGGCu -3'
miRNA:   3'- -UCGCGU--UCAu----GCUGCGCCGGU---------------AGUCG- -5'
17137 5' -55.4 NC_004333.2 + 22431 0.75 0.224642
Target:  5'- cGGCGC--GUGCGGCGCaGGUuuCGUCGGCu -3'
miRNA:   3'- -UCGCGuuCAUGCUGCG-CCG--GUAGUCG- -5'
17137 5' -55.4 NC_004333.2 + 34309 0.74 0.230682
Target:  5'- gGGCGuCAAGUGCGACcgGCGGCgacaAUguGCg -3'
miRNA:   3'- -UCGC-GUUCAUGCUG--CGCCGg---UAguCG- -5'
17137 5' -55.4 NC_004333.2 + 20478 0.74 0.236858
Target:  5'- aGGCGguGacGaGCGGCGCGGCCAcugCGGCc -3'
miRNA:   3'- -UCGCguU--CaUGCUGCGCCGGUa--GUCG- -5'
17137 5' -55.4 NC_004333.2 + 31307 0.74 0.243173
Target:  5'- cGGCGC---UGCGccGCGCGGCCGUCGcGCc -3'
miRNA:   3'- -UCGCGuucAUGC--UGCGCCGGUAGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.