miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 42763 0.66 0.408498
Target:  5'- cGCCCGCucgucggccgGCGUGgAGacgaucGGCGCuGUUGCGGg -3'
miRNA:   3'- -CGGGCG----------CGUACgUC------CUGCG-CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 3295 0.66 0.408498
Target:  5'- uGCCCgGCGuCAU-CGGGGCGgGCgGCGc -3'
miRNA:   3'- -CGGG-CGC-GUAcGUCCUGCgCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 36362 0.66 0.408498
Target:  5'- gGgCgGCGCGUaucgcauggcGCAGGACGUcgcgugucGCUGCAu -3'
miRNA:   3'- -CgGgCGCGUA----------CGUCCUGCG--------CGACGUc -5'
17151 5' -60.6 NC_004333.2 + 25942 0.66 0.399432
Target:  5'- cGCUCGCGCAc-CAa-GCGCuGCUGCAGa -3'
miRNA:   3'- -CGGGCGCGUacGUccUGCG-CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 27695 0.66 0.396738
Target:  5'- uGCCCGUgaaugcuggcaacgGCAUGCAGaAgGCGCcGCGc -3'
miRNA:   3'- -CGGGCG--------------CGUACGUCcUgCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 18603 0.66 0.381692
Target:  5'- aCCgGCGCG-GCAGGcGCGgGCgGCAa -3'
miRNA:   3'- cGGgCGCGUaCGUCC-UGCgCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 45088 0.66 0.381692
Target:  5'- cGCCaCGCGCGgucgagcgGCcGGACaGCGCgccgugGUAGa -3'
miRNA:   3'- -CGG-GCGCGUa-------CGuCCUG-CGCGa-----CGUC- -5'
17151 5' -60.6 NC_004333.2 + 6644 0.66 0.380819
Target:  5'- -aUCGCGCucgGCAGcgcgcucGGCGCGCUcgaGCAGg -3'
miRNA:   3'- cgGGCGCGua-CGUC-------CUGCGCGA---CGUC- -5'
17151 5' -60.6 NC_004333.2 + 47856 0.66 0.373022
Target:  5'- aGCCUGCGaucUGCAGGuauucgaGCGCgGCGa -3'
miRNA:   3'- -CGGGCGCgu-ACGUCCug-----CGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 3793 0.66 0.370447
Target:  5'- cGCCCGgGgGUGCGcGAgGCGCUcaaccagacgauccGCAGc -3'
miRNA:   3'- -CGGGCgCgUACGUcCUgCGCGA--------------CGUC- -5'
17151 5' -60.6 NC_004333.2 + 47191 0.66 0.370447
Target:  5'- -gCCGCGCAgcacgagGCAcaagucgccgcgacGGGCGCGCUacuuucgaGCGGa -3'
miRNA:   3'- cgGGCGCGUa------CGU--------------CCUGCGCGA--------CGUC- -5'
17151 5' -60.6 NC_004333.2 + 12384 0.66 0.364486
Target:  5'- cGCCCGCGCcccGCccGGCGCGC--CAGu -3'
miRNA:   3'- -CGGGCGCGua-CGucCUGCGCGacGUC- -5'
17151 5' -60.6 NC_004333.2 + 16927 0.66 0.364486
Target:  5'- cGCCCGUcgaucGCcuugGCcGcGACGCGCUGCu- -3'
miRNA:   3'- -CGGGCG-----CGua--CGuC-CUGCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 13955 0.66 0.364486
Target:  5'- aGCCCGUGCcgGCcgacuuCGCGCggcGCGGc -3'
miRNA:   3'- -CGGGCGCGuaCGuccu--GCGCGa--CGUC- -5'
17151 5' -60.6 NC_004333.2 + 39261 0.66 0.364486
Target:  5'- gGgCCGUGCugccgGUGCAGcGCGCGCaGCAc -3'
miRNA:   3'- -CgGGCGCG-----UACGUCcUGCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 869 0.66 0.363639
Target:  5'- uCCUGCGCcgGCGaccGGcACGCucaaggucgaaggGCUGCAGu -3'
miRNA:   3'- cGGGCGCGuaCGU---CC-UGCG-------------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 45173 0.66 0.356086
Target:  5'- uGgCCGCGCuUGCu-GAUGCGCaGCGGc -3'
miRNA:   3'- -CgGGCGCGuACGucCUGCGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 42928 0.67 0.347823
Target:  5'- gGCCguaCGCGaAUGgugggcucgcCGGGAUGCGCUGCAa -3'
miRNA:   3'- -CGG---GCGCgUAC----------GUCCUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 45739 0.67 0.347823
Target:  5'- cGCCCGCucgguagguGCAUGCGcaGCGCGC-GCGc -3'
miRNA:   3'- -CGGGCG---------CGUACGUccUGCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 12809 0.67 0.339698
Target:  5'- cGUgCGCGCGUaccaGCGuaACGCGUUGCAGc -3'
miRNA:   3'- -CGgGCGCGUA----CGUccUGCGCGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.