miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 47888 0.68 0.286712
Target:  5'- aGCgC-CGUccGCAGGcgGCGCGCUGCAc -3'
miRNA:   3'- -CGgGcGCGuaCGUCC--UGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 5260 0.68 0.284593
Target:  5'- -gCCGCGCcUGCAGGcgauguucaaucagGCGCaaGCUGCGc -3'
miRNA:   3'- cgGGCGCGuACGUCC--------------UGCG--CGACGUc -5'
17151 5' -60.6 NC_004333.2 + 38770 0.68 0.279697
Target:  5'- cGCCgGCGgcUGCGGGAauuucaGCGCgGCGGc -3'
miRNA:   3'- -CGGgCGCguACGUCCUg-----CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 35241 0.68 0.279003
Target:  5'- cGCCUGCagugcgGCAuuggucgaaacugUGCAGGugGCGUUcGUAGa -3'
miRNA:   3'- -CGGGCG------CGU-------------ACGUCCugCGCGA-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 20934 0.68 0.276929
Target:  5'- cGCCCauaccuugugGCGUucgaGCAGGAUGCGCggccgcccgucggGCAGg -3'
miRNA:   3'- -CGGG----------CGCGua--CGUCCUGCGCGa------------CGUC- -5'
17151 5' -60.6 NC_004333.2 + 44954 0.68 0.272819
Target:  5'- aGCUgGCGCAgcgagucggGCAGGuuguCGCGC-GCGGc -3'
miRNA:   3'- -CGGgCGCGUa--------CGUCCu---GCGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 45541 0.68 0.272819
Target:  5'- uGCUCGgGCG-GCAGGugGaCGCcGUAGu -3'
miRNA:   3'- -CGGGCgCGUaCGUCCugC-GCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 4883 0.68 0.272819
Target:  5'- -gCCGCugacCAUGUAGcGCGCGCUGCGa -3'
miRNA:   3'- cgGGCGc---GUACGUCcUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 37230 0.68 0.270782
Target:  5'- -gCCGCGC-UGCGGGAUGcCGCacgugaucgcgucgUGCGGc -3'
miRNA:   3'- cgGGCGCGuACGUCCUGC-GCG--------------ACGUC- -5'
17151 5' -60.6 NC_004333.2 + 28136 0.68 0.266077
Target:  5'- uCgCGCGCAUcugGCAGGACGUGCUuacGCc- -3'
miRNA:   3'- cGgGCGCGUA---CGUCCUGCGCGA---CGuc -5'
17151 5' -60.6 NC_004333.2 + 31134 0.68 0.264082
Target:  5'- cGCUCGCGUcguucggcgugaauAUccaGCAGGACGUgccgcacauGCUGCAGc -3'
miRNA:   3'- -CGGGCGCG--------------UA---CGUCCUGCG---------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 38375 0.69 0.246662
Target:  5'- cGCCgguCGcCGCGUGCAcGGuCGCGCgUGCAu -3'
miRNA:   3'- -CGG---GC-GCGUACGU-CCuGCGCG-ACGUc -5'
17151 5' -60.6 NC_004333.2 + 12457 0.69 0.246662
Target:  5'- aCUgGCGCGccggGCGGGGCGCGg-GCGGg -3'
miRNA:   3'- cGGgCGCGUa---CGUCCUGCGCgaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 43473 0.69 0.23438
Target:  5'- uGCCUGCGCGggcggcUGCGGGACcauaGCGaUUGCGc -3'
miRNA:   3'- -CGGGCGCGU------ACGUCCUG----CGC-GACGUc -5'
17151 5' -60.6 NC_004333.2 + 20975 0.69 0.228434
Target:  5'- uCCUGCGCGccaaGUAGcACGCGCUGCGc -3'
miRNA:   3'- cGGGCGCGUa---CGUCcUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 11911 0.69 0.228434
Target:  5'- gGCCCG-GCAUgcGCAGcGGCGCGC-GCGc -3'
miRNA:   3'- -CGGGCgCGUA--CGUC-CUGCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 12384 0.7 0.222617
Target:  5'- aCCCGCGCGaggcuggcgcGCAGGACGcCGCaaUGCGc -3'
miRNA:   3'- cGGGCGCGUa---------CGUCCUGC-GCG--ACGUc -5'
17151 5' -60.6 NC_004333.2 + 18169 0.7 0.205917
Target:  5'- uGCCCGa--AUGCGGacguGGCGCGCUcGCAGa -3'
miRNA:   3'- -CGGGCgcgUACGUC----CUGCGCGA-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 8609 0.71 0.190311
Target:  5'- -gCCGgGCAUGCcGGuCGCGCUGUu- -3'
miRNA:   3'- cgGGCgCGUACGuCCuGCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 2011 0.71 0.185345
Target:  5'- gGCCCGCGUcgccgGUGCGGGccaGCuGgUGCAGa -3'
miRNA:   3'- -CGGGCGCG-----UACGUCCug-CG-CgACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.