miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17153 3' -60.9 NC_004333.2 + 17631 1.09 0.000245
Target:  5'- gCGCCCGGUGCCGUGGCCGACACGUUCg -3'
miRNA:   3'- -GCGGGCCACGGCACCGGCUGUGCAAG- -5'
17153 3' -60.9 NC_004333.2 + 25499 0.73 0.148652
Target:  5'- aCGCCCGGcgugacgGCCGccGCCGGCACGc-- -3'
miRNA:   3'- -GCGGGCCa------CGGCacCGGCUGUGCaag -5'
17153 3' -60.9 NC_004333.2 + 26561 0.72 0.176092
Target:  5'- cCGCgCCGGUcuucgucccuGCgaucgugucguugaaCGUGGUCGGCGCGUUCa -3'
miRNA:   3'- -GCG-GGCCA----------CG---------------GCACCGGCUGUGCAAG- -5'
17153 3' -60.9 NC_004333.2 + 31615 0.71 0.193439
Target:  5'- cCGUCuCGGccGCUGUGGCCGcGCGCGUg- -3'
miRNA:   3'- -GCGG-GCCa-CGGCACCGGC-UGUGCAag -5'
17153 3' -60.9 NC_004333.2 + 27385 0.71 0.198516
Target:  5'- uGCCCGGcgcgacgGCCGU-GCCGuCAUGUUUg -3'
miRNA:   3'- gCGGGCCa------CGGCAcCGGCuGUGCAAG- -5'
17153 3' -60.9 NC_004333.2 + 38714 0.69 0.243436
Target:  5'- uGCCC-GUGCCGcccgGGCCGAUcagaACGggCa -3'
miRNA:   3'- gCGGGcCACGGCa---CCGGCUG----UGCaaG- -5'
17153 3' -60.9 NC_004333.2 + 15364 0.69 0.255914
Target:  5'- gCGCCCGGUGCUGauGCUGAC-CGcgCc -3'
miRNA:   3'- -GCGGGCCACGGCacCGGCUGuGCaaG- -5'
17153 3' -60.9 NC_004333.2 + 12348 0.69 0.255914
Target:  5'- gCGCcgCCGGUGCCGUGuacguuGUCGACGCa--- -3'
miRNA:   3'- -GCG--GGCCACGGCAC------CGGCUGUGcaag -5'
17153 3' -60.9 NC_004333.2 + 8656 0.69 0.262347
Target:  5'- gCGCCCGGcuUGCuCGUGacgguGCCGuCGgCGUUCa -3'
miRNA:   3'- -GCGGGCC--ACG-GCAC-----CGGCuGU-GCAAG- -5'
17153 3' -60.9 NC_004333.2 + 17151 0.68 0.282436
Target:  5'- gGCCCGGUucGCCGaUGuuCCGGCGCGg-- -3'
miRNA:   3'- gCGGGCCA--CGGC-ACc-GGCUGUGCaag -5'
17153 3' -60.9 NC_004333.2 + 38007 0.68 0.303725
Target:  5'- uCGCUCGGcuuCCaGUGcGCCGACcCGUUCg -3'
miRNA:   3'- -GCGGGCCac-GG-CAC-CGGCUGuGCAAG- -5'
17153 3' -60.9 NC_004333.2 + 2647 0.68 0.31109
Target:  5'- cCGCCUGGacgGCCGUGauuGCCGAU-CGUcUCg -3'
miRNA:   3'- -GCGGGCCa--CGGCAC---CGGCUGuGCA-AG- -5'
17153 3' -60.9 NC_004333.2 + 2011 0.67 0.326225
Target:  5'- gGCCCGcGUcGCCGgugcgGGCCagcuggugcaGACGCGUg- -3'
miRNA:   3'- gCGGGC-CA-CGGCa----CCGG----------CUGUGCAag -5'
17153 3' -60.9 NC_004333.2 + 45994 0.67 0.333996
Target:  5'- uGCCacuCGGcGCCGagGGCUGGCACGg-- -3'
miRNA:   3'- gCGG---GCCaCGGCa-CCGGCUGUGCaag -5'
17153 3' -60.9 NC_004333.2 + 16919 0.67 0.341901
Target:  5'- gCGCCCGcGUGUuaauCGUGGUCGACuACa--- -3'
miRNA:   3'- -GCGGGC-CACG----GCACCGGCUG-UGcaag -5'
17153 3' -60.9 NC_004333.2 + 46904 0.67 0.34994
Target:  5'- aGCuuG-UGCCGUucgauGCCGAgCACGUUCg -3'
miRNA:   3'- gCGggCcACGGCAc----CGGCU-GUGCAAG- -5'
17153 3' -60.9 NC_004333.2 + 35796 0.67 0.34994
Target:  5'- aCGCcgCCGGaUGCCGUuauugugccuGaGCCGACacucGCGUUCg -3'
miRNA:   3'- -GCG--GGCC-ACGGCA----------C-CGGCUG----UGCAAG- -5'
17153 3' -60.9 NC_004333.2 + 37536 0.67 0.34994
Target:  5'- uCGuUCCGGUGCgcugcuCGUGcgucagcucGCCGACGCGUUg -3'
miRNA:   3'- -GC-GGGCCACG------GCAC---------CGGCUGUGCAAg -5'
17153 3' -60.9 NC_004333.2 + 13955 0.67 0.354827
Target:  5'- aGCCC-GUGCCGgccgacuucgcgcGGCgCGGCGCGcUCa -3'
miRNA:   3'- gCGGGcCACGGCa------------CCG-GCUGUGCaAG- -5'
17153 3' -60.9 NC_004333.2 + 30050 0.67 0.363912
Target:  5'- gCGCUCGGcGCCgGUGGCagcgcggccgcgcuCGGCACGcgCu -3'
miRNA:   3'- -GCGGGCCaCGG-CACCG--------------GCUGUGCaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.