Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17153 | 3' | -60.9 | NC_004333.2 | + | 16919 | 0.67 | 0.341901 |
Target: 5'- gCGCCCGcGUGUuaauCGUGGUCGACuACa--- -3' miRNA: 3'- -GCGGGC-CACG----GCACCGGCUG-UGcaag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 38007 | 0.68 | 0.303725 |
Target: 5'- uCGCUCGGcuuCCaGUGcGCCGACcCGUUCg -3' miRNA: 3'- -GCGGGCCac-GG-CAC-CGGCUGuGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 8656 | 0.69 | 0.262347 |
Target: 5'- gCGCCCGGcuUGCuCGUGacgguGCCGuCGgCGUUCa -3' miRNA: 3'- -GCGGGCC--ACG-GCAC-----CGGCuGU-GCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 27385 | 0.71 | 0.198516 |
Target: 5'- uGCCCGGcgcgacgGCCGU-GCCGuCAUGUUUg -3' miRNA: 3'- gCGGGCCa------CGGCAcCGGCuGUGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 31615 | 0.71 | 0.193439 |
Target: 5'- cCGUCuCGGccGCUGUGGCCGcGCGCGUg- -3' miRNA: 3'- -GCGG-GCCa-CGGCACCGGC-UGUGCAag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 26561 | 0.72 | 0.176092 |
Target: 5'- cCGCgCCGGUcuucgucccuGCgaucgugucguugaaCGUGGUCGGCGCGUUCa -3' miRNA: 3'- -GCG-GGCCA----------CG---------------GCACCGGCUGUGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 17631 | 1.09 | 0.000245 |
Target: 5'- gCGCCCGGUGCCGUGGCCGACACGUUCg -3' miRNA: 3'- -GCGGGCCACGGCACCGGCUGUGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 38626 | 0.66 | 0.418966 |
Target: 5'- uGCCCguGGUGcCCGUucugaucggcccGGgCGGCACGggCa -3' miRNA: 3'- gCGGG--CCAC-GGCA------------CCgGCUGUGCaaG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 5533 | 0.66 | 0.409893 |
Target: 5'- gGUCa--UGCCGUGGCCGGCgACGg-- -3' miRNA: 3'- gCGGgccACGGCACCGGCUG-UGCaag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 2291 | 0.66 | 0.400944 |
Target: 5'- gGCaaguCGuGUaCCGUGGCCGGCACGc-- -3' miRNA: 3'- gCGg---GC-CAcGGCACCGGCUGUGCaag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 37536 | 0.67 | 0.34994 |
Target: 5'- uCGuUCCGGUGCgcugcuCGUGcgucagcucGCCGACGCGUUg -3' miRNA: 3'- -GC-GGGCCACG------GCAC---------CGGCUGUGCAAg -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 47609 | 0.66 | 0.374855 |
Target: 5'- aGCUgCGcGUcGCCGagaUGGgCGGCACGUUCg -3' miRNA: 3'- gCGG-GC-CA-CGGC---ACCgGCUGUGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 2749 | 0.66 | 0.408993 |
Target: 5'- aGCCgagaucgCGGccGCCGU-GCCGGuCGCGUUCg -3' miRNA: 3'- gCGG-------GCCa-CGGCAcCGGCU-GUGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 45994 | 0.67 | 0.333996 |
Target: 5'- uGCCacuCGGcGCCGagGGCUGGCACGg-- -3' miRNA: 3'- gCGG---GCCaCGGCa-CCGGCUGUGCaag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 25413 | 0.66 | 0.374855 |
Target: 5'- gCGCCUGcagcGUGCCGgcggcGGCCGuCACGc-- -3' miRNA: 3'- -GCGGGC----CACGGCa----CCGGCuGUGCaag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 46904 | 0.67 | 0.34994 |
Target: 5'- aGCuuG-UGCCGUucgauGCCGAgCACGUUCg -3' miRNA: 3'- gCGggCcACGGCAc----CGGCU-GUGCAAG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 25499 | 0.73 | 0.148652 |
Target: 5'- aCGCCCGGcgugacgGCCGccGCCGGCACGc-- -3' miRNA: 3'- -GCGGGCCa------CGGCacCGGCUGUGCaag -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 38714 | 0.69 | 0.243436 |
Target: 5'- uGCCC-GUGCCGcccgGGCCGAUcagaACGggCa -3' miRNA: 3'- gCGGGcCACGGCa---CCGGCUG----UGCaaG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 15364 | 0.69 | 0.255914 |
Target: 5'- gCGCCCGGUGCUGauGCUGAC-CGcgCc -3' miRNA: 3'- -GCGGGCCACGGCacCGGCUGuGCaaG- -5' |
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17153 | 3' | -60.9 | NC_004333.2 | + | 18537 | 0.66 | 0.383423 |
Target: 5'- aCGCcuCCGGUGCCG-GGuuG-CGCGa-- -3' miRNA: 3'- -GCG--GGCCACGGCaCCggCuGUGCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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