miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 3' -50.3 NC_004333.2 + 17360 0.68 0.835999
Target:  5'- -gGACGCUGCGccGGCcgGCGUUCAcgucGAAGGc -3'
miRNA:   3'- agCUGUGGCGC--UCG--CGCAAGU----UUUUC- -5'
17155 3' -50.3 NC_004333.2 + 17416 0.67 0.870969
Target:  5'- cUUGACACCGCuGcgugcgcuauacAGCGCGaUCAGAu-- -3'
miRNA:   3'- -AGCUGUGGCG-C------------UCGCGCaAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 17473 0.7 0.733963
Target:  5'- gUCGugACCGCGcuGCGCGagCAGc--- -3'
miRNA:   3'- -AGCugUGGCGCu-CGCGCaaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 18438 1.1 0.002692
Target:  5'- gUCGACACCGCGAGCGCGUUCAAAAAGu -3'
miRNA:   3'- -AGCUGUGGCGCUCGCGCAAGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 18490 0.66 0.927706
Target:  5'- gUCGACGCCGCcGAucgcgaggcguuGCGC-UUCGGAcGGc -3'
miRNA:   3'- -AGCUGUGGCG-CU------------CGCGcAAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 18604 0.66 0.908618
Target:  5'- cCGGCGCgGCaGGCGCGggCGGc--- -3'
miRNA:   3'- aGCUGUGgCGcUCGCGCaaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 18804 0.66 0.932907
Target:  5'- aUCGcGCgGCCGCaGGGCGCGUgcugcuaUCGAAGc- -3'
miRNA:   3'- -AGC-UG-UGGCG-CUCGCGCA-------AGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 19360 0.66 0.908618
Target:  5'- gUCGACAUCGCGcuCGagcaGUUCAAc--- -3'
miRNA:   3'- -AGCUGUGGCGCucGCg---CAAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 19623 0.7 0.755664
Target:  5'- gCGAgCGCgGCGAGCGCGgcCGAc--- -3'
miRNA:   3'- aGCU-GUGgCGCUCGCGCaaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 20166 0.67 0.886879
Target:  5'- cUCGGcCGCCGgcuCGGGCGCacaCAAGAAGg -3'
miRNA:   3'- -AGCU-GUGGC---GCUCGCGcaaGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 20677 0.67 0.893673
Target:  5'- cCGACugCGCGAGgccgagcCGCGccugCAGAAAc -3'
miRNA:   3'- aGCUGugGCGCUC-------GCGCaa--GUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 25216 0.68 0.826652
Target:  5'- gUCGACGcCCGCGAcGCuGcCGUUCGGGu-- -3'
miRNA:   3'- -AGCUGU-GGCGCU-CG-C-GCAAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 25237 0.66 0.908618
Target:  5'- gCGGCGgCagGCGAGCGUGUcgaUCGGAGGc -3'
miRNA:   3'- aGCUGUgG--CGCUCGCGCA---AGUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 25269 0.66 0.908618
Target:  5'- gUCGACGucgagUCGCGcAGCGaGUUCGAGAc- -3'
miRNA:   3'- -AGCUGU-----GGCGC-UCGCgCAAGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 25638 0.66 0.93347
Target:  5'- gCGGCGUCGUcAGCGCGgUCGAAAGc -3'
miRNA:   3'- aGCUGUGGCGcUCGCGCaAGUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 27758 0.7 0.733963
Target:  5'- aCGACgucucGCUGC-AGCGCGUUCAGGu-- -3'
miRNA:   3'- aGCUG-----UGGCGcUCGCGCAAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 28841 0.68 0.826652
Target:  5'- gCGcCGCCGCGAcccGCGCGgUCGAc--- -3'
miRNA:   3'- aGCuGUGGCGCU---CGCGCaAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 30232 0.72 0.619699
Target:  5'- aUCGACgcGCCGCGcgcgaucAGUGCGUUCAu---- -3'
miRNA:   3'- -AGCUG--UGGCGC-------UCGCGCAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 30832 0.69 0.807303
Target:  5'- gUCGACACCGCGucguagaaCGCG-UCGAGc-- -3'
miRNA:   3'- -AGCUGUGGCGCuc------GCGCaAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 30970 0.66 0.93347
Target:  5'- gUCGACGCgCuCGA-CGCGUUCAAc--- -3'
miRNA:   3'- -AGCUGUG-GcGCUcGCGCAAGUUuuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.