miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 3' -50.3 NC_004333.2 + 709 0.66 0.927706
Target:  5'- cCGcCGcCCGCGAGCGcCGUggCGAGGu- -3'
miRNA:   3'- aGCuGU-GGCGCUCGC-GCAa-GUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 775 0.66 0.915279
Target:  5'- aCGGCGCuCGCGGGCgGCGgcaCGAu--- -3'
miRNA:   3'- aGCUGUG-GCGCUCG-CGCaa-GUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 1499 0.66 0.901662
Target:  5'- cUCGaACugCGCGAGCGaCGgcgagUCGGc--- -3'
miRNA:   3'- -AGC-UGugGCGCUCGC-GCa----AGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 3372 0.67 0.886879
Target:  5'- cCGcGCGCCGCc-GCGCGcaCAAGGAGa -3'
miRNA:   3'- aGC-UGUGGCGcuCGCGCaaGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 3553 0.66 0.927706
Target:  5'- gCGGUGCCGCGcAGCGCG-UCGGc--- -3'
miRNA:   3'- aGCUGUGGCGC-UCGCGCaAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 4920 0.72 0.620844
Target:  5'- aUCGGCACgGCGcGCGCGUacggUCAGc--- -3'
miRNA:   3'- -AGCUGUGgCGCuCGCGCA----AGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 5265 0.75 0.465868
Target:  5'- cCGACGCCGCGccugcaGGCGaUGUUCAAucAGg -3'
miRNA:   3'- aGCUGUGGCGC------UCGC-GCAAGUUuuUC- -5'
17155 3' -50.3 NC_004333.2 + 6650 0.73 0.563939
Target:  5'- cUCGGCAgCGCGcucGGCGCGcUCGAGcAGg -3'
miRNA:   3'- -AGCUGUgGCGC---UCGCGCaAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 6709 0.68 0.835999
Target:  5'- gCG-CGCUGcCGAGCGCGaUCGAGuuGa -3'
miRNA:   3'- aGCuGUGGC-GCUCGCGCaAGUUUuuC- -5'
17155 3' -50.3 NC_004333.2 + 7753 0.68 0.826652
Target:  5'- aCGACGCCGUGGuCGgGUUCGc---- -3'
miRNA:   3'- aGCUGUGGCGCUcGCgCAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 10866 0.67 0.861758
Target:  5'- cUUGACGCCGCGcgggaagaacgccGGCGCGacagUCAc---- -3'
miRNA:   3'- -AGCUGUGGCGC-------------UCGCGCa---AGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 11697 0.68 0.857467
Target:  5'- uUCGACACguuCGCGcgcgaagugacggccGGCGCGUuUCAGGAu- -3'
miRNA:   3'- -AGCUGUG---GCGC---------------UCGCGCA-AGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 12032 0.67 0.862609
Target:  5'- gUCGACGCUGCGuGCaagGCGcUCGAc--- -3'
miRNA:   3'- -AGCUGUGGCGCuCG---CGCaAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 12633 0.71 0.689336
Target:  5'- gUCGAguUCGCGaAGCGCGUUCc----- -3'
miRNA:   3'- -AGCUguGGCGC-UCGCGCAAGuuuuuc -5'
17155 3' -50.3 NC_004333.2 + 13081 0.66 0.915279
Target:  5'- cCGACACCGaCuGGCGUGUgcgCAGc--- -3'
miRNA:   3'- aGCUGUGGC-GcUCGCGCAa--GUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 13120 0.73 0.541529
Target:  5'- aCGGCAUCGCGAGCuGCG-UCAu---- -3'
miRNA:   3'- aGCUGUGGCGCUCG-CGCaAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 13598 0.66 0.93347
Target:  5'- gCGGCaacGCCGCGAGCaCG-UCGGAcGGc -3'
miRNA:   3'- aGCUG---UGGCGCUCGcGCaAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 14418 0.71 0.700614
Target:  5'- aUGcCGCCGUGucGCGCGUcuacaUCGAAGAGg -3'
miRNA:   3'- aGCuGUGGCGCu-CGCGCA-----AGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 15666 0.67 0.879062
Target:  5'- cCGugACCGaCGAGCaGCGUgCGAc--- -3'
miRNA:   3'- aGCugUGGC-GCUCG-CGCAaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 17065 0.74 0.519423
Target:  5'- aCGGCguauGCCGCGAguuGCGCGUUCGGu--- -3'
miRNA:   3'- aGCUG----UGGCGCU---CGCGCAAGUUuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.