miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 3' -50.3 NC_004333.2 + 18438 1.1 0.002692
Target:  5'- gUCGACACCGCGAGCGCGUUCAAAAAGu -3'
miRNA:   3'- -AGCUGUGGCGCUCGCGCAAGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 38619 0.76 0.425162
Target:  5'- gUCGuuGCCGUGAGCGCG-UCGGAcGGc -3'
miRNA:   3'- -AGCugUGGCGCUCGCGCaAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 5265 0.75 0.465868
Target:  5'- cCGACGCCGCGccugcaGGCGaUGUUCAAucAGg -3'
miRNA:   3'- aGCUGUGGCGC------UCGC-GCAAGUUuuUC- -5'
17155 3' -50.3 NC_004333.2 + 34963 0.74 0.519423
Target:  5'- cCGGCcauuGCCGUGAGUGCGUUUugcAGAGg -3'
miRNA:   3'- aGCUG----UGGCGCUCGCGCAAGuu-UUUC- -5'
17155 3' -50.3 NC_004333.2 + 17065 0.74 0.519423
Target:  5'- aCGGCguauGCCGCGAguuGCGCGUUCGGu--- -3'
miRNA:   3'- aGCUG----UGGCGCU---CGCGCAAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 13120 0.73 0.541529
Target:  5'- aCGGCAUCGCGAGCuGCG-UCAu---- -3'
miRNA:   3'- aGCUGUGGCGCUCG-CGCaAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 6650 0.73 0.563939
Target:  5'- cUCGGCAgCGCGcucGGCGCGcUCGAGcAGg -3'
miRNA:   3'- -AGCUGUgGCGC---UCGCGCaAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 30232 0.72 0.619699
Target:  5'- aUCGACgcGCCGCGcgcgaucAGUGCGUUCAu---- -3'
miRNA:   3'- -AGCUG--UGGCGC-------UCGCGCAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 4920 0.72 0.620844
Target:  5'- aUCGGCACgGCGcGCGCGUacggUCAGc--- -3'
miRNA:   3'- -AGCUGUGgCGCuCGCGCA----AGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 39888 0.72 0.620844
Target:  5'- aCGGCAgCCGgGuauGCGCGUUCGGAcGGc -3'
miRNA:   3'- aGCUGU-GGCgCu--CGCGCAAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 46887 0.71 0.677999
Target:  5'- cCGAgUGCCGCGAGCGCcuguGUUCAu---- -3'
miRNA:   3'- aGCU-GUGGCGCUCGCG----CAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 46919 0.71 0.689336
Target:  5'- --aGCGCCGCGAGCGCcg-CGAAGc- -3'
miRNA:   3'- agcUGUGGCGCUCGCGcaaGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 12633 0.71 0.689336
Target:  5'- gUCGAguUCGCGaAGCGCGUUCc----- -3'
miRNA:   3'- -AGCUguGGCGC-UCGCGCAAGuuuuuc -5'
17155 3' -50.3 NC_004333.2 + 14418 0.71 0.700614
Target:  5'- aUGcCGCCGUGucGCGCGUcuacaUCGAAGAGg -3'
miRNA:   3'- aGCuGUGGCGCu-CGCGCA-----AGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 45287 0.7 0.733963
Target:  5'- aCGACGucCCGaagcuCGAG-GCGUUCGAGAAGg -3'
miRNA:   3'- aGCUGU--GGC-----GCUCgCGCAAGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 27758 0.7 0.733963
Target:  5'- aCGACgucucGCUGC-AGCGCGUUCAGGu-- -3'
miRNA:   3'- aGCUG-----UGGCGcUCGCGCAAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 17473 0.7 0.733963
Target:  5'- gUCGugACCGCGcuGCGCGagCAGc--- -3'
miRNA:   3'- -AGCugUGGCGCu-CGCGCaaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 19623 0.7 0.755664
Target:  5'- gCGAgCGCgGCGAGCGCGgcCGAc--- -3'
miRNA:   3'- aGCU-GUGgCGCUCGCGCaaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 34818 0.69 0.776819
Target:  5'- -gGAUAUCGCGGGCGgCGUcacgUCAAcuAAGGg -3'
miRNA:   3'- agCUGUGGCGCUCGC-GCA----AGUU--UUUC- -5'
17155 3' -50.3 NC_004333.2 + 45031 0.69 0.776819
Target:  5'- gUCGGCcGCCGaCGuGCGCGcgCAGGAu- -3'
miRNA:   3'- -AGCUG-UGGC-GCuCGCGCaaGUUUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.