miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 3' -50.3 NC_004333.2 + 18438 1.1 0.002692
Target:  5'- gUCGACACCGCGAGCGCGUUCAAAAAGu -3'
miRNA:   3'- -AGCUGUGGCGCUCGCGCAAGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 20166 0.67 0.886879
Target:  5'- cUCGGcCGCCGgcuCGGGCGCacaCAAGAAGg -3'
miRNA:   3'- -AGCU-GUGGC---GCUCGCGcaaGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 46862 0.67 0.894414
Target:  5'- aUCGACGCCGU--GCGC--UCGAAAGa -3'
miRNA:   3'- -AGCUGUGGCGcuCGCGcaAGUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 37729 0.66 0.93347
Target:  5'- gUCGGCaagcuGCCGCGccuGCGCGagaUCGAcGAGc -3'
miRNA:   3'- -AGCUG-----UGGCGCu--CGCGCa--AGUUuUUC- -5'
17155 3' -50.3 NC_004333.2 + 30232 0.72 0.619699
Target:  5'- aUCGACgcGCCGCGcgcgaucAGUGCGUUCAu---- -3'
miRNA:   3'- -AGCUG--UGGCGC-------UCGCGCAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 46887 0.71 0.677999
Target:  5'- cCGAgUGCCGCGAGCGCcuguGUUCAu---- -3'
miRNA:   3'- aGCU-GUGGCGCUCGCG----CAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 46919 0.71 0.689336
Target:  5'- --aGCGCCGCGAGCGCcg-CGAAGc- -3'
miRNA:   3'- agcUGUGGCGCUCGCGcaaGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 45287 0.7 0.733963
Target:  5'- aCGACGucCCGaagcuCGAG-GCGUUCGAGAAGg -3'
miRNA:   3'- aGCUGU--GGC-----GCUCgCGCAAGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 30832 0.69 0.807303
Target:  5'- gUCGACACCGCGucguagaaCGCG-UCGAGc-- -3'
miRNA:   3'- -AGCUGUGGCGCuc------GCGCaAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 10866 0.67 0.861758
Target:  5'- cUUGACGCCGCGcgggaagaacgccGGCGCGacagUCAc---- -3'
miRNA:   3'- -AGCUGUGGCGC-------------UCGCGCa---AGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 44573 0.68 0.817082
Target:  5'- aUCGACACCGaCGcgauggucGGCGUGUggGAAAAc -3'
miRNA:   3'- -AGCUGUGGC-GC--------UCGCGCAagUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 43074 0.69 0.797325
Target:  5'- gUGACGCCGCacaucGAGaCGCGaUCAAcGAGu -3'
miRNA:   3'- aGCUGUGGCG-----CUC-GCGCaAGUUuUUC- -5'
17155 3' -50.3 NC_004333.2 + 34963 0.74 0.519423
Target:  5'- cCGGCcauuGCCGUGAGUGCGUUUugcAGAGg -3'
miRNA:   3'- aGCUG----UGGCGCUCGCGCAAGuu-UUUC- -5'
17155 3' -50.3 NC_004333.2 + 25216 0.68 0.826652
Target:  5'- gUCGACGcCCGCGAcGCuGcCGUUCGGGu-- -3'
miRNA:   3'- -AGCUGU-GGCGCU-CG-C-GCAAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 13120 0.73 0.541529
Target:  5'- aCGGCAUCGCGAGCuGCG-UCAu---- -3'
miRNA:   3'- aGCUGUGGCGCUCG-CGCaAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 19623 0.7 0.755664
Target:  5'- gCGAgCGCgGCGAGCGCGgcCGAc--- -3'
miRNA:   3'- aGCU-GUGgCGCUCGCGCaaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 44389 0.68 0.835999
Target:  5'- cUCGGCGgCGCGuGCGCGguaCAAc--- -3'
miRNA:   3'- -AGCUGUgGCGCuCGCGCaa-GUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 43590 0.67 0.886879
Target:  5'- cUCGAa--CGCGAGUGCGcgagCAAGAAu -3'
miRNA:   3'- -AGCUgugGCGCUCGCGCaa--GUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 6650 0.73 0.563939
Target:  5'- cUCGGCAgCGCGcucGGCGCGcUCGAGcAGg -3'
miRNA:   3'- -AGCUGUgGCGC---UCGCGCaAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 12633 0.71 0.689336
Target:  5'- gUCGAguUCGCGaAGCGCGUUCc----- -3'
miRNA:   3'- -AGCUguGGCGC-UCGCGCAAGuuuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.