miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 5' -59.5 NC_004333.2 + 13898 0.66 0.504751
Target:  5'- cGGCACgGGcugcgcGGCGg--CUGCCGUgGCg -3'
miRNA:   3'- -CCGUGgCCu-----CCGCaugGGCGGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 48103 0.66 0.504751
Target:  5'- cGGCaACCGGGcGcGCGcACCgCGCCGgcaugGUg -3'
miRNA:   3'- -CCG-UGGCCU-C-CGCaUGG-GCGGCaa---CG- -5'
17155 5' -59.5 NC_004333.2 + 29479 0.66 0.494678
Target:  5'- aGCGCCGcGAcGGCGaacgGCguuaCGCCGuUUGCu -3'
miRNA:   3'- cCGUGGC-CU-CCGCa---UGg---GCGGC-AACG- -5'
17155 5' -59.5 NC_004333.2 + 37261 0.66 0.488678
Target:  5'- cGGCACCGGcgcgcgucgugagcGGCGUgucGCCgCGCUGcgggaUGCc -3'
miRNA:   3'- -CCGUGGCCu-------------CCGCA---UGG-GCGGCa----ACG- -5'
17155 5' -59.5 NC_004333.2 + 6833 0.66 0.484698
Target:  5'- cGGCuACCucGAGGCGcgcgACCggggCGCCGUgGCg -3'
miRNA:   3'- -CCG-UGGc-CUCCGCa---UGG----GCGGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 18041 0.66 0.474815
Target:  5'- cGCGCUGaucGCGcUGCCCGCUGcUGCg -3'
miRNA:   3'- cCGUGGCcucCGC-AUGGGCGGCaACG- -5'
17155 5' -59.5 NC_004333.2 + 9631 0.66 0.474815
Target:  5'- cGGCuGCCGGcGGCGcGCCUGCgCccgGCu -3'
miRNA:   3'- -CCG-UGGCCuCCGCaUGGGCG-GcaaCG- -5'
17155 5' -59.5 NC_004333.2 + 14029 0.66 0.473832
Target:  5'- cGGcCGCCGGccugaagucgccaAGGCG-GCCaCGCUGgcgGCa -3'
miRNA:   3'- -CC-GUGGCC-------------UCCGCaUGG-GCGGCaa-CG- -5'
17155 5' -59.5 NC_004333.2 + 3270 0.66 0.465034
Target:  5'- cGCGCCGGGccGGCucACCgGCCucgUGCu -3'
miRNA:   3'- cCGUGGCCU--CCGcaUGGgCGGca-ACG- -5'
17155 5' -59.5 NC_004333.2 + 721 0.66 0.455359
Target:  5'- aGCGCCGu-GGCGagguugaUUGCCGUUGCg -3'
miRNA:   3'- cCGUGGCcuCCGCaug----GGCGGCAACG- -5'
17155 5' -59.5 NC_004333.2 + 28232 0.67 0.445793
Target:  5'- aGCACCGGAuGCGUA-UCGCUGUcaaccucgGCg -3'
miRNA:   3'- cCGUGGCCUcCGCAUgGGCGGCAa-------CG- -5'
17155 5' -59.5 NC_004333.2 + 43275 0.67 0.436341
Target:  5'- gGGCGCaaGGGGCGccgauCCCGgCCGgcuaUGCg -3'
miRNA:   3'- -CCGUGgcCUCCGCau---GGGC-GGCa---ACG- -5'
17155 5' -59.5 NC_004333.2 + 25423 0.67 0.436341
Target:  5'- cGUGCCGGcGGCG-GCCgucaCGCCGggcgUGCc -3'
miRNA:   3'- cCGUGGCCuCCGCaUGG----GCGGCa---ACG- -5'
17155 5' -59.5 NC_004333.2 + 22145 0.67 0.436341
Target:  5'- gGGCGCCucuuuccuGGCGcUACgCGCCGU-GCa -3'
miRNA:   3'- -CCGUGGccu-----CCGC-AUGgGCGGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 6888 0.67 0.427005
Target:  5'- -cCGCCGGA-GUG---CCGCCGUUGCg -3'
miRNA:   3'- ccGUGGCCUcCGCaugGGCGGCAACG- -5'
17155 5' -59.5 NC_004333.2 + 12441 0.67 0.426078
Target:  5'- gGGCGCgGGcGGGCGcUAcggcgccCCCGaCCGUcGCg -3'
miRNA:   3'- -CCGUGgCC-UCCGC-AU-------GGGC-GGCAaCG- -5'
17155 5' -59.5 NC_004333.2 + 22189 0.67 0.417789
Target:  5'- cGGCGgCGGuucGGCGgcugcgGCCUGCuCGaUGCc -3'
miRNA:   3'- -CCGUgGCCu--CCGCa-----UGGGCG-GCaACG- -5'
17155 5' -59.5 NC_004333.2 + 25336 0.67 0.408695
Target:  5'- cGUAaCGGucGCGUugCCGgUCGUUGCg -3'
miRNA:   3'- cCGUgGCCucCGCAugGGC-GGCAACG- -5'
17155 5' -59.5 NC_004333.2 + 28992 0.67 0.408695
Target:  5'- cGGcCGCCGGGucGGCGUGCgcaUCGCgCGcgGCu -3'
miRNA:   3'- -CC-GUGGCCU--CCGCAUG---GGCG-GCaaCG- -5'
17155 5' -59.5 NC_004333.2 + 45596 0.67 0.399725
Target:  5'- -cCACCGcucgaaugcGGGGCGccccGCCCGCCaGUUGUa -3'
miRNA:   3'- ccGUGGC---------CUCCGCa---UGGGCGG-CAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.