miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17156 5' -46.8 NC_004333.2 + 18743 1.09 0.006671
Target:  5'- cUCGAAAAUCUCAACACGCGCACGUUGc -3'
miRNA:   3'- -AGCUUUUAGAGUUGUGCGCGUGCAAC- -5'
17156 5' -46.8 NC_004333.2 + 28115 0.87 0.170398
Target:  5'- cCGAAAAUCUCAACGCGCGCGuuucCGUa- -3'
miRNA:   3'- aGCUUUUAGAGUUGUGCGCGU----GCAac -5'
17156 5' -46.8 NC_004333.2 + 33265 0.75 0.697569
Target:  5'- gUCGGAugauuGUCaaguUCAGCcgaGCGCGCGCGUUGc -3'
miRNA:   3'- -AGCUUu----UAG----AGUUG---UGCGCGUGCAAC- -5'
17156 5' -46.8 NC_004333.2 + 44938 0.73 0.765224
Target:  5'- cCGAAGAagUCGgcagcuauccuGCGCGCGCACGUc- -3'
miRNA:   3'- aGCUUUUagAGU-----------UGUGCGCGUGCAac -5'
17156 5' -46.8 NC_004333.2 + 28573 0.73 0.776034
Target:  5'- cCGAAAGuUCUCAccuuguacuuGCGCGUGCcGCGUUGc -3'
miRNA:   3'- aGCUUUU-AGAGU----------UGUGCGCG-UGCAAC- -5'
17156 5' -46.8 NC_004333.2 + 15344 0.73 0.797129
Target:  5'- cUUGucGAUCUCGGCgcagACGCGCGCGcUGa -3'
miRNA:   3'- -AGCuuUUAGAGUUG----UGCGCGUGCaAC- -5'
17156 5' -46.8 NC_004333.2 + 11186 0.72 0.846193
Target:  5'- gUUGAAAAUCcacuucucgCGACccGCGCGCACGUg- -3'
miRNA:   3'- -AGCUUUUAGa--------GUUG--UGCGCGUGCAac -5'
17156 5' -46.8 NC_004333.2 + 21677 0.72 0.857954
Target:  5'- cUCGAAGAUaugacggccgagcagCUCGACGCgcucuauGCGCACGUg- -3'
miRNA:   3'- -AGCUUUUA---------------GAGUUGUG-------CGCGUGCAac -5'
17156 5' -46.8 NC_004333.2 + 45500 0.71 0.888862
Target:  5'- gCGAGAucGUCUaCAACugGCGgGCGggGc -3'
miRNA:   3'- aGCUUU--UAGA-GUUGugCGCgUGCaaC- -5'
17156 5' -46.8 NC_004333.2 + 4235 0.71 0.888862
Target:  5'- cUCGAGAAcaUCGGCGugaggaugcCGCGCACGUUc -3'
miRNA:   3'- -AGCUUUUagAGUUGU---------GCGCGUGCAAc -5'
17156 5' -46.8 NC_004333.2 + 37269 0.7 0.903888
Target:  5'- gCGGAA--CUCGGCACcgGCGCGCGUcgUGa -3'
miRNA:   3'- aGCUUUuaGAGUUGUG--CGCGUGCA--AC- -5'
17156 5' -46.8 NC_004333.2 + 19036 0.7 0.917676
Target:  5'- aUCGAuucGAUCUCGAuCAUGCGUugGc-- -3'
miRNA:   3'- -AGCUu--UUAGAGUU-GUGCGCGugCaac -5'
17156 5' -46.8 NC_004333.2 + 25789 0.69 0.935994
Target:  5'- gCGcgcGAUCUUAucACGCGCGCACGc-- -3'
miRNA:   3'- aGCuu-UUAGAGU--UGUGCGCGUGCaac -5'
17156 5' -46.8 NC_004333.2 + 22011 0.69 0.941468
Target:  5'- gCGAA----UCAGCGCGCGgGCGUUu -3'
miRNA:   3'- aGCUUuuagAGUUGUGCGCgUGCAAc -5'
17156 5' -46.8 NC_004333.2 + 45733 0.69 0.941468
Target:  5'- cUCGGuAGGUgcaugcgCAGCGCGCGCGCGUc- -3'
miRNA:   3'- -AGCU-UUUAga-----GUUGUGCGCGUGCAac -5'
17156 5' -46.8 NC_004333.2 + 15801 0.69 0.94663
Target:  5'- cUCGAAgcguucGAUCgcgcCGACGCcuGCGCACGUUc -3'
miRNA:   3'- -AGCUU------UUAGa---GUUGUG--CGCGUGCAAc -5'
17156 5' -46.8 NC_004333.2 + 6886 0.69 0.94663
Target:  5'- aUCGAGcgGAUCgcggCGACAgcggcgucuuuUGCGCACGUUu -3'
miRNA:   3'- -AGCUU--UUAGa---GUUGU-----------GCGCGUGCAAc -5'
17156 5' -46.8 NC_004333.2 + 11118 0.68 0.95603
Target:  5'- gUCGAGAA-UUCGACcCGgGCGCGcUUGg -3'
miRNA:   3'- -AGCUUUUaGAGUUGuGCgCGUGC-AAC- -5'
17156 5' -46.8 NC_004333.2 + 5590 0.68 0.95603
Target:  5'- gCGGccAUCg-GGCAUGCGCACGUUc -3'
miRNA:   3'- aGCUuuUAGagUUGUGCGCGUGCAAc -5'
17156 5' -46.8 NC_004333.2 + 29846 0.68 0.95603
Target:  5'- gUCGAcuGAUCguucgCAGCgaaGCGCGCGCGg-- -3'
miRNA:   3'- -AGCUu-UUAGa----GUUG---UGCGCGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.