Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17156 | 5' | -46.8 | NC_004333.2 | + | 2288 | 0.66 | 0.984089 |
Target: 5'- gUCGGcAAGUCguguaccguggcCGGCACGCcCGCGUUGa -3' miRNA: 3'- -AGCU-UUUAGa-----------GUUGUGCGcGUGCAAC- -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 4235 | 0.71 | 0.888862 |
Target: 5'- cUCGAGAAcaUCGGCGugaggaugcCGCGCACGUUc -3' miRNA: 3'- -AGCUUUUagAGUUGU---------GCGCGUGCAAc -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 5590 | 0.68 | 0.95603 |
Target: 5'- gCGGccAUCg-GGCAUGCGCACGUUc -3' miRNA: 3'- aGCUuuUAGagUUGUGCGCGUGCAAc -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 6285 | 0.67 | 0.982333 |
Target: 5'- uUCGAAGuUUgacgCAACgaGCGCGCugGUg- -3' miRNA: 3'- -AGCUUUuAGa---GUUG--UGCGCGugCAac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 6886 | 0.69 | 0.94663 |
Target: 5'- aUCGAGcgGAUCgcggCGACAgcggcgucuuuUGCGCACGUUu -3' miRNA: 3'- -AGCUU--UUAGa---GUUGU-----------GCGCGUGCAAc -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 11118 | 0.68 | 0.95603 |
Target: 5'- gUCGAGAA-UUCGACcCGgGCGCGcUUGg -3' miRNA: 3'- -AGCUUUUaGAGUUGuGCgCGUGC-AAC- -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 11186 | 0.72 | 0.846193 |
Target: 5'- gUUGAAAAUCcacuucucgCGACccGCGCGCACGUg- -3' miRNA: 3'- -AGCUUUUAGa--------GUUG--UGCGCGUGCAac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 12739 | 0.68 | 0.95603 |
Target: 5'- gCGuuAcgCUgGuACGCGCGCACGUa- -3' miRNA: 3'- aGCuuUuaGAgU-UGUGCGCGUGCAac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 13106 | 0.66 | 0.991232 |
Target: 5'- gUCGGGcAUCUUGAUggaccuCGCGCagGCGUUGa -3' miRNA: 3'- -AGCUUuUAGAGUUGu-----GCGCG--UGCAAC- -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 14313 | 0.66 | 0.984507 |
Target: 5'- cUCGAAAGaggC-GCGCGCGCACGc-- -3' miRNA: 3'- -AGCUUUUagaGuUGUGCGCGUGCaac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 15344 | 0.73 | 0.797129 |
Target: 5'- cUUGucGAUCUCGGCgcagACGCGCGCGcUGa -3' miRNA: 3'- -AGCuuUUAGAGUUG----UGCGCGUGCaAC- -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 15801 | 0.69 | 0.94663 |
Target: 5'- cUCGAAgcguucGAUCgcgcCGACGCcuGCGCACGUUc -3' miRNA: 3'- -AGCUU------UUAGa---GUUGUG--CGCGUGCAAc -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 17016 | 0.66 | 0.988238 |
Target: 5'- gUCGccGcgCUCGACuCGUGCACGcUGc -3' miRNA: 3'- -AGCuuUuaGAGUUGuGCGCGUGCaAC- -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 17246 | 0.66 | 0.991232 |
Target: 5'- aUCGggGcUCgCAGCggccuugucgACGCGCACGa-- -3' miRNA: 3'- -AGCuuUuAGaGUUG----------UGCGCGUGCaac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 17335 | 0.66 | 0.984507 |
Target: 5'- gUCGAAggcAAUCUgCAGCGCGUccucauGCGCGg-- -3' miRNA: 3'- -AGCUU---UUAGA-GUUGUGCG------CGUGCaac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 18384 | 0.66 | 0.989821 |
Target: 5'- gUGAGGAUCgu-GCGCaCGCGCGUg- -3' miRNA: 3'- aGCUUUUAGaguUGUGcGCGUGCAac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 18743 | 1.09 | 0.006671 |
Target: 5'- cUCGAAAAUCUCAACACGCGCACGUUGc -3' miRNA: 3'- -AGCUUUUAGAGUUGUGCGCGUGCAAC- -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 19036 | 0.7 | 0.917676 |
Target: 5'- aUCGAuucGAUCUCGAuCAUGCGUugGc-- -3' miRNA: 3'- -AGCUu--UUAGAGUU-GUGCGCGugCaac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 19859 | 0.67 | 0.974435 |
Target: 5'- aUCGca---CUCAACGCGCgGCACGa-- -3' miRNA: 3'- -AGCuuuuaGAGUUGUGCG-CGUGCaac -5' |
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17156 | 5' | -46.8 | NC_004333.2 | + | 20723 | 0.66 | 0.984507 |
Target: 5'- gCGguGAUgaCGGCGCGCGCGCu--- -3' miRNA: 3'- aGCuuUUAgaGUUGUGCGCGUGcaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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