miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17165 3' -54.1 NC_004333.2 + 23866 1.11 0.001161
Target:  5'- aACCGACGACGACGUUCGGGUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUGCUGCAAGCCCAAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 29274 0.78 0.214966
Target:  5'- gGCUGgaACGACGccAUGcgCGGGUUCGUGCa -3'
miRNA:   3'- -UGGC--UGCUGC--UGCaaGCCCAAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 25221 0.77 0.220698
Target:  5'- cGCCcGCGACGcugcCGUUCGGGUUCGaaaUGCc -3'
miRNA:   3'- -UGGcUGCUGCu---GCAAGCCCAAGC---ACG- -5'
17165 3' -54.1 NC_004333.2 + 7760 0.77 0.226559
Target:  5'- cACCGcuACGACGcCGUggUCGGGUUCGccgGCa -3'
miRNA:   3'- -UGGC--UGCUGCuGCA--AGCCCAAGCa--CG- -5'
17165 3' -54.1 NC_004333.2 + 22176 0.73 0.390539
Target:  5'- cGCCGGCGGCGGCcggCGgcGGUUCG-GCg -3'
miRNA:   3'- -UGGCUGCUGCUGcaaGC--CCAAGCaCG- -5'
17165 3' -54.1 NC_004333.2 + 11222 0.73 0.399608
Target:  5'- cAUCGACuuCGGgGauaaaUUCGGGUUCGUGCu -3'
miRNA:   3'- -UGGCUGcuGCUgC-----AAGCCCAAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 8999 0.73 0.418144
Target:  5'- gACCGACG-CGGCGUUCGcGGcUUGccagGCg -3'
miRNA:   3'- -UGGCUGCuGCUGCAAGC-CCaAGCa---CG- -5'
17165 3' -54.1 NC_004333.2 + 40779 0.72 0.437195
Target:  5'- cGCCGgugACGaucGCGGCGaUCGGGUUgGUGUu -3'
miRNA:   3'- -UGGC---UGC---UGCUGCaAGCCCAAgCACG- -5'
17165 3' -54.1 NC_004333.2 + 25425 0.72 0.446905
Target:  5'- uGCCGGCGGCGGcCGUcacgcCGGG--CGUGCc -3'
miRNA:   3'- -UGGCUGCUGCU-GCAa----GCCCaaGCACG- -5'
17165 3' -54.1 NC_004333.2 + 18169 0.72 0.466678
Target:  5'- aGCCGAuUGcCGGCGUgcCGGGUgaugcgcucgUCGUGCg -3'
miRNA:   3'- -UGGCU-GCuGCUGCAa-GCCCA----------AGCACG- -5'
17165 3' -54.1 NC_004333.2 + 37744 0.71 0.476732
Target:  5'- gGCCGGcCGACGAgCGggUCGGGcgCGcGCu -3'
miRNA:   3'- -UGGCU-GCUGCU-GCa-AGCCCaaGCaCG- -5'
17165 3' -54.1 NC_004333.2 + 10908 0.71 0.486894
Target:  5'- cGCCGACGACaguGCGUUCucGGUUCucaugccgGUGCg -3'
miRNA:   3'- -UGGCUGCUGc--UGCAAGc-CCAAG--------CACG- -5'
17165 3' -54.1 NC_004333.2 + 23499 0.71 0.507514
Target:  5'- gACCGAucCGGcCGGCGg-CGGGUaCGUGCc -3'
miRNA:   3'- -UGGCU--GCU-GCUGCaaGCCCAaGCACG- -5'
17165 3' -54.1 NC_004333.2 + 8700 0.71 0.517963
Target:  5'- cGCCGAgcuCGACGuCGcgcaUCGGcUUCGUGCa -3'
miRNA:   3'- -UGGCU---GCUGCuGCa---AGCCcAAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 2694 0.7 0.542306
Target:  5'- cGCCGGCGGCGGCcgacaggccgaucucG-UCGGcgaaguuGUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUGCUG---------------CaAGCC-------CAAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 44577 0.7 0.582198
Target:  5'- gGCCGGCGuCca-GUcCGGGUUCGcUGCg -3'
miRNA:   3'- -UGGCUGCuGcugCAaGCCCAAGC-ACG- -5'
17165 3' -54.1 NC_004333.2 + 42697 0.69 0.614974
Target:  5'- cGCCGGcCGACGAgCGggCGGcGUUCGa-- -3'
miRNA:   3'- -UGGCU-GCUGCU-GCaaGCC-CAAGCacg -5'
17165 3' -54.1 NC_004333.2 + 30749 0.69 0.625941
Target:  5'- cGCCGGCGGCGGCGcgaaCGGcUUCaugaagGUGCu -3'
miRNA:   3'- -UGGCUGCUGCUGCaa--GCCcAAG------CACG- -5'
17165 3' -54.1 NC_004333.2 + 9790 0.69 0.625941
Target:  5'- cGCCGACG-CGGCGuUUCGcGaaccgCGUGCg -3'
miRNA:   3'- -UGGCUGCuGCUGC-AAGC-Ccaa--GCACG- -5'
17165 3' -54.1 NC_004333.2 + 6654 0.69 0.636914
Target:  5'- cGCCGugG-CGGCGaugCGGGcuUUCGcGCg -3'
miRNA:   3'- -UGGCugCuGCUGCaa-GCCC--AAGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.