Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17165 | 3' | -54.1 | NC_004333.2 | + | 2694 | 0.7 | 0.542306 |
Target: 5'- cGCCGGCGGCGGCcgacaggccgaucucG-UCGGcgaaguuGUUCGUGCc -3' miRNA: 3'- -UGGCUGCUGCUG---------------CaAGCC-------CAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 5544 | 0.68 | 0.658836 |
Target: 5'- gGCCGGCGACGGC--UUGGcGcgaGUGCa -3' miRNA: 3'- -UGGCUGCUGCUGcaAGCC-CaagCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 6654 | 0.69 | 0.636914 |
Target: 5'- cGCCGugG-CGGCGaugCGGGcuUUCGcGCg -3' miRNA: 3'- -UGGCugCuGCUGCaa-GCCC--AAGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 7518 | 0.67 | 0.734221 |
Target: 5'- -aUGAC-ACGGCG-UCGGGccgucUCGUGCa -3' miRNA: 3'- ugGCUGcUGCUGCaAGCCCa----AGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 7760 | 0.77 | 0.226559 |
Target: 5'- cACCGcuACGACGcCGUggUCGGGUUCGccgGCa -3' miRNA: 3'- -UGGC--UGCUGCuGCA--AGCCCAAGCa--CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 8700 | 0.71 | 0.517963 |
Target: 5'- cGCCGAgcuCGACGuCGcgcaUCGGcUUCGUGCa -3' miRNA: 3'- -UGGCU---GCUGCuGCa---AGCCcAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 8999 | 0.73 | 0.418144 |
Target: 5'- gACCGACG-CGGCGUUCGcGGcUUGccagGCg -3' miRNA: 3'- -UGGCUGCuGCUGCAAGC-CCaAGCa---CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 9790 | 0.69 | 0.625941 |
Target: 5'- cGCCGACG-CGGCGuUUCGcGaaccgCGUGCg -3' miRNA: 3'- -UGGCUGCuGCUGC-AAGC-Ccaa--GCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 10908 | 0.71 | 0.486894 |
Target: 5'- cGCCGACGACaguGCGUUCucGGUUCucaugccgGUGCg -3' miRNA: 3'- -UGGCUGCUGc--UGCAAGc-CCAAG--------CACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 11222 | 0.73 | 0.399608 |
Target: 5'- cAUCGACuuCGGgGauaaaUUCGGGUUCGUGCu -3' miRNA: 3'- -UGGCUGcuGCUgC-----AAGCCCAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 12518 | 0.67 | 0.744672 |
Target: 5'- gGCCGACGACGAUa-UCGacGGU--GUGCu -3' miRNA: 3'- -UGGCUGCUGCUGcaAGC--CCAagCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 13549 | 0.66 | 0.794037 |
Target: 5'- cGCCGGCGGCcaggccgGAUGUgUCGGcuuucucuUUCGUGCc -3' miRNA: 3'- -UGGCUGCUG-------CUGCA-AGCCc-------AAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 18169 | 0.72 | 0.466678 |
Target: 5'- aGCCGAuUGcCGGCGUgcCGGGUgaugcgcucgUCGUGCg -3' miRNA: 3'- -UGGCU-GCuGCUGCAa-GCCCA----------AGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 18560 | 0.68 | 0.647882 |
Target: 5'- aGCCGgcGCGGCGGCGaaucCGaacccGUUCGUGCa -3' miRNA: 3'- -UGGC--UGCUGCUGCaa--GCc----CAAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 19751 | 0.66 | 0.769273 |
Target: 5'- uGCCGucaACGACGcgaucggccgcuccaACGcaCGGGaUCGUGCc -3' miRNA: 3'- -UGGC---UGCUGC---------------UGCaaGCCCaAGCACG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22176 | 0.73 | 0.390539 |
Target: 5'- cGCCGGCGGCGGCcggCGgcGGUUCG-GCg -3' miRNA: 3'- -UGGCUGCUGCUGcaaGC--CCAAGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22367 | 0.68 | 0.702299 |
Target: 5'- uCCGACGAUugGACGUUCGucauGGU-CG-GCg -3' miRNA: 3'- uGGCUGCUG--CUGCAAGC----CCAaGCaCG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22591 | 0.68 | 0.702299 |
Target: 5'- cAUCGGCGcuCGuguuguucGCGUccgUCGGGUUCGUcGCg -3' miRNA: 3'- -UGGCUGCu-GC--------UGCA---AGCCCAAGCA-CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 22645 | 0.67 | 0.723667 |
Target: 5'- cGCCGAugucgUGACGACGg-CGGGUuucaccgcgcgcUCGUcGCu -3' miRNA: 3'- -UGGCU-----GCUGCUGCaaGCCCA------------AGCA-CG- -5' |
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17165 | 3' | -54.1 | NC_004333.2 | + | 23499 | 0.71 | 0.507514 |
Target: 5'- gACCGAucCGGcCGGCGg-CGGGUaCGUGCc -3' miRNA: 3'- -UGGCU--GCU-GCUGCaaGCCCAaGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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