miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 12447 0.71 0.21115
Target:  5'- cGGGCGGggcgcgGGCGgGCGCUacgGCGCCc -3'
miRNA:   3'- -UCCGUCauaca-CCGCgCGUGG---CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 13449 0.66 0.427597
Target:  5'- uGGaugacgGUcGUGCGCACCGCGUCg -3'
miRNA:   3'- uCCgucauaCAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 13973 0.7 0.246554
Target:  5'- cGGCGGccgGUGcGCGCGaGCUGCGCg -3'
miRNA:   3'- uCCGUCauaCAC-CGCGCgUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 15176 0.66 0.446678
Target:  5'- cGGCAGUGcGUaGGuCGCGUucgcaauCCGCacgGCCg -3'
miRNA:   3'- uCCGUCAUaCA-CC-GCGCGu------GGCG---CGG- -5'
17171 5' -59.6 NC_004333.2 + 17450 0.73 0.141338
Target:  5'- cGGGCAccggAUGUGGCGCaacgcgaagGcCGCCGCGCUc -3'
miRNA:   3'- -UCCGUca--UACACCGCG---------C-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 17736 0.66 0.452494
Target:  5'- uGGCcgacuccagGUGGUGCGCaagcauucaGCCGgCGCCg -3'
miRNA:   3'- uCCGucaua----CACCGCGCG---------UGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 19721 0.72 0.185073
Target:  5'- cGGCGcug-GUGGCGUGCaagACgGCGCCg -3'
miRNA:   3'- uCCGUcauaCACCGCGCG---UGgCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20198 0.72 0.180212
Target:  5'- cGGCAGUAaUG-GGCGCG-GCuCGCGCUu -3'
miRNA:   3'- uCCGUCAU-ACaCCGCGCgUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20392 0.68 0.31629
Target:  5'- aAGGCc----GUGGC-CGCagugGCCGCGCCg -3'
miRNA:   3'- -UCCGucauaCACCGcGCG----UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20479 0.7 0.228272
Target:  5'- aAGGCGGUGacgaGcGGCGCGgcCACUGCgGCCa -3'
miRNA:   3'- -UCCGUCAUa---CaCCGCGC--GUGGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 20722 0.66 0.427597
Target:  5'- -uGCGGUgAUGacGGCGCGCG-CGCuGCCg -3'
miRNA:   3'- ucCGUCA-UACa-CCGCGCGUgGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 20806 0.68 0.348081
Target:  5'- cGGCG--AUGUccGGCaGCGCG-CGCGCCg -3'
miRNA:   3'- uCCGUcaUACA--CCG-CGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20844 0.73 0.141338
Target:  5'- gAGcGCAGgcGUGUcgacguucaGGCGCGCAgCCGCGUCg -3'
miRNA:   3'- -UC-CGUCa-UACA---------CCGCGCGU-GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 21945 0.72 0.177349
Target:  5'- gGGGCuaugcgcagcgaaccAGcuUGUaGCGCGCGCCGCGUCg -3'
miRNA:   3'- -UCCG---------------UCauACAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 22491 0.77 0.078746
Target:  5'- cGGCGGUcUGaucGGUGCGCGCaUGCGCCg -3'
miRNA:   3'- uCCGUCAuACa--CCGCGCGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 25204 0.69 0.279698
Target:  5'- cGGGCAGgccgcgaacGUGcGCGC-CGCCGUGCUc -3'
miRNA:   3'- -UCCGUCaua------CAC-CGCGcGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 26275 1.12 0.000183
Target:  5'- gAGGCAGUAUGUGGCGCGCACCGCGCCg -3'
miRNA:   3'- -UCCGUCAUACACCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 27365 0.68 0.308692
Target:  5'- uGGuGCGGUAgccGUggaagugcccGGCGCGacgGCCGUGCCg -3'
miRNA:   3'- -UC-CGUCAUa--CA----------CCGCGCg--UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 28228 0.68 0.339924
Target:  5'- cGGGCGcGUcacggugaccGUGacGCGCGCGCgGCGCUc -3'
miRNA:   3'- -UCCGU-CA----------UACacCGCGCGUGgCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30045 0.72 0.1663
Target:  5'- cGGCGccg-GUGGCaGCGCgGCCGCGCUc -3'
miRNA:   3'- uCCGUcauaCACCG-CGCG-UGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.