miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 247 0.67 0.36908
Target:  5'- cGGGCAGUGgacucgcgccaGGCGCcgaucguGUGCuCGCGCCg -3'
miRNA:   3'- -UCCGUCAUaca--------CCGCG-------CGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 676 0.67 0.373382
Target:  5'- cGGUAGUGcccgugcucgGUGaGCGCG-AUCGUGCCg -3'
miRNA:   3'- uCCGUCAUa---------CAC-CGCGCgUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 906 0.68 0.311715
Target:  5'- aGGGguGUugGUcggcauugcgcccucGUaGCGUGCGCCGCGCUa -3'
miRNA:   3'- -UCCguCA--UA---------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 2428 0.68 0.324028
Target:  5'- cGGCAGcGUGccuugguacGGCGCGgcgaacacCugCGCGCCg -3'
miRNA:   3'- uCCGUCaUACa--------CCGCGC--------GugGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 2527 0.7 0.234236
Target:  5'- cGGCuucGUuc--GGCGCGCagguguucGCCGCGCCg -3'
miRNA:   3'- uCCGu--CAuacaCCGCGCG--------UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 3198 0.66 0.427597
Target:  5'- gAGGcCGGUGaGccGGCccgGCGCGCCGCccGCCc -3'
miRNA:   3'- -UCC-GUCAUaCa-CCG---CGCGUGGCG--CGG- -5'
17171 5' -59.6 NC_004333.2 + 3291 0.69 0.279698
Target:  5'- cGGCGucaUcgGggcgGGCgGCGCGCCGgGCCg -3'
miRNA:   3'- uCCGUc--AuaCa---CCG-CGCGUGGCgCGG- -5'
17171 5' -59.6 NC_004333.2 + 3640 0.67 0.356377
Target:  5'- uGGcGCAcUAUGUGGUcggccgacGCGCugCGCGgCa -3'
miRNA:   3'- -UC-CGUcAUACACCG--------CGCGugGCGCgG- -5'
17171 5' -59.6 NC_004333.2 + 4836 0.71 0.199832
Target:  5'- uGGaUAGUcgGcUGaccguacGCGCGCGCCGUGCCg -3'
miRNA:   3'- uCC-GUCAuaC-AC-------CGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 6649 0.71 0.216731
Target:  5'- uGGCGGcgAUGcgGGCuuucgcGCGUACgCGCGCCg -3'
miRNA:   3'- uCCGUCa-UACa-CCG------CGCGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 8299 0.71 0.216731
Target:  5'- uAGGUAGgc---GGCGCGCGgggcUCGCGCCc -3'
miRNA:   3'- -UCCGUCauacaCCGCGCGU----GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 8863 0.66 0.437078
Target:  5'- aAGGUAucgcGgcUGcGGCGCGguuaGCCGCGCa -3'
miRNA:   3'- -UCCGU----CauACaCCGCGCg---UGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 9196 0.76 0.096994
Target:  5'- cGGCAGUGUcgaucGcGGUGCGCACCgacuucgcauccaucGCGCCg -3'
miRNA:   3'- uCCGUCAUA-----CaCCGCGCGUGG---------------CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9290 0.67 0.373382
Target:  5'- cGGCGcgAUGgaugcgaagucGGUGCGCACCGCGaUCg -3'
miRNA:   3'- uCCGUcaUACa----------CCGCGCGUGGCGC-GG- -5'
17171 5' -59.6 NC_004333.2 + 9466 0.67 0.364811
Target:  5'- cAGGCGcg----GGUGcCGCACCGcCGCCg -3'
miRNA:   3'- -UCCGUcauacaCCGC-GCGUGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 9538 0.68 0.31629
Target:  5'- cGGCGGc----GGUGCgGCAcCCGCGCCu -3'
miRNA:   3'- uCCGUCauacaCCGCG-CGU-GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9631 0.7 0.259405
Target:  5'- cGGCuGccgGcGGCGCGC-CUGCGCCc -3'
miRNA:   3'- uCCGuCauaCaCCGCGCGuGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9686 0.72 0.185073
Target:  5'- cGGCAGcc---GGUGCGCaaccggccgauGCCGCGCCg -3'
miRNA:   3'- uCCGUCauacaCCGCGCG-----------UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 11713 0.66 0.41824
Target:  5'- cGGGCGGcGUGcUGGCGUcCugCGCGauguCCg -3'
miRNA:   3'- -UCCGUCaUAC-ACCGCGcGugGCGC----GG- -5'
17171 5' -59.6 NC_004333.2 + 12287 0.68 0.308692
Target:  5'- cGGCAccg-GcGGCGCGCAUugcggcguccugCGCGCCa -3'
miRNA:   3'- uCCGUcauaCaCCGCGCGUG------------GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.