miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 26275 1.12 0.000183
Target:  5'- gAGGCAGUAUGUGGCGCGCACCGCGCCg -3'
miRNA:   3'- -UCCGUCAUACACCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 48099 0.82 0.034267
Target:  5'- cAGGCGGcaaccggGcGCGCGCACCGCGCCg -3'
miRNA:   3'- -UCCGUCauaca--C-CGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 22491 0.77 0.078746
Target:  5'- cGGCGGUcUGaucGGUGCGCGCaUGCGCCg -3'
miRNA:   3'- uCCGUCAuACa--CCGCGCGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9196 0.76 0.096994
Target:  5'- cGGCAGUGUcgaucGcGGUGCGCACCgacuucgcauccaucGCGCCg -3'
miRNA:   3'- uCCGUCAUA-----CaCCGCGCGUGG---------------CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 41637 0.74 0.137527
Target:  5'- cGGCAGauUGUcgGGCGCGgGCUGCgGCCg -3'
miRNA:   3'- uCCGUCauACA--CCGCGCgUGGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 17450 0.73 0.141338
Target:  5'- cGGGCAccggAUGUGGCGCaacgcgaagGcCGCCGCGCUc -3'
miRNA:   3'- -UCCGUca--UACACCGCG---------C-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20844 0.73 0.141338
Target:  5'- gAGcGCAGgcGUGUcgacguucaGGCGCGCAgCCGCGUCg -3'
miRNA:   3'- -UC-CGUCa-UACA---------CCGCGCGU-GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30045 0.72 0.1663
Target:  5'- cGGCGccg-GUGGCaGCGCgGCCGCGCUc -3'
miRNA:   3'- uCCGUcauaCACCG-CGCG-UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 21945 0.72 0.177349
Target:  5'- gGGGCuaugcgcagcgaaccAGcuUGUaGCGCGCGCCGCGUCg -3'
miRNA:   3'- -UCCG---------------UCauACAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20198 0.72 0.180212
Target:  5'- cGGCAGUAaUG-GGCGCG-GCuCGCGCUu -3'
miRNA:   3'- uCCGUCAU-ACaCCGCGCgUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 19721 0.72 0.185073
Target:  5'- cGGCGcug-GUGGCGUGCaagACgGCGCCg -3'
miRNA:   3'- uCCGUcauaCACCGCGCG---UGgCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9686 0.72 0.185073
Target:  5'- cGGCAGcc---GGUGCGCaaccggccgauGCCGCGCCg -3'
miRNA:   3'- uCCGUCauacaCCGCGCG-----------UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30493 0.71 0.195145
Target:  5'- gAGGCAGUcgcuacGGCGCGCGaauucgguCCGgCGCCg -3'
miRNA:   3'- -UCCGUCAuaca--CCGCGCGU--------GGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 4836 0.71 0.199832
Target:  5'- uGGaUAGUcgGcUGaccguacGCGCGCGCCGUGCCg -3'
miRNA:   3'- uCC-GUCAuaC-AC-------CGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 46183 0.71 0.205693
Target:  5'- uGGGCgaccgaGGgcUG-GGCGCGUcUCGCGCCg -3'
miRNA:   3'- -UCCG------UCauACaCCGCGCGuGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 12447 0.71 0.21115
Target:  5'- cGGGCGGggcgcgGGCGgGCGCUacgGCGCCc -3'
miRNA:   3'- -UCCGUCauaca-CCGCgCGUGG---CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 8299 0.71 0.216731
Target:  5'- uAGGUAGgc---GGCGCGCGgggcUCGCGCCc -3'
miRNA:   3'- -UCCGUCauacaCCGCGCGU----GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 6649 0.71 0.216731
Target:  5'- uGGCGGcgAUGcgGGCuuucgcGCGUACgCGCGCCg -3'
miRNA:   3'- uCCGUCa-UACa-CCG------CGCGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20479 0.7 0.228272
Target:  5'- aAGGCGGUGacgaGcGGCGCGgcCACUGCgGCCa -3'
miRNA:   3'- -UCCGUCAUa---CaCCGCGC--GUGGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 2527 0.7 0.234236
Target:  5'- cGGCuucGUuc--GGCGCGCagguguucGCCGCGCCg -3'
miRNA:   3'- uCCGu--CAuacaCCGCGCG--------UGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.