miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 26275 1.12 0.000183
Target:  5'- gAGGCAGUAUGUGGCGCGCACCGCGCCg -3'
miRNA:   3'- -UCCGUCAUACACCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20392 0.68 0.31629
Target:  5'- aAGGCc----GUGGC-CGCagugGCCGCGCCg -3'
miRNA:   3'- -UCCGucauaCACCGcGCG----UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 28228 0.68 0.339924
Target:  5'- cGGGCGcGUcacggugaccGUGacGCGCGCGCgGCGCUc -3'
miRNA:   3'- -UCCGU-CA----------UACacCGCGCGUGgCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 17736 0.66 0.452494
Target:  5'- uGGCcgacuccagGUGGUGCGCaagcauucaGCCGgCGCCg -3'
miRNA:   3'- uCCGucaua----CACCGCGCG---------UGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 17450 0.73 0.141338
Target:  5'- cGGGCAccggAUGUGGCGCaacgcgaagGcCGCCGCGCUc -3'
miRNA:   3'- -UCCGUca--UACACCGCG---------C-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20198 0.72 0.180212
Target:  5'- cGGCAGUAaUG-GGCGCG-GCuCGCGCUu -3'
miRNA:   3'- uCCGUCAU-ACaCCGCGCgUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 4836 0.71 0.199832
Target:  5'- uGGaUAGUcgGcUGaccguacGCGCGCGCCGUGCCg -3'
miRNA:   3'- uCC-GUCAuaC-AC-------CGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 46183 0.71 0.205693
Target:  5'- uGGGCgaccgaGGgcUG-GGCGCGUcUCGCGCCg -3'
miRNA:   3'- -UCCG------UCauACaCCGCGCGuGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 47981 0.7 0.259405
Target:  5'- cGGCGGUGUGcGGCugugcuacaucgGCGCGuucuggcuugcCCGCGCg -3'
miRNA:   3'- uCCGUCAUACaCCG------------CGCGU-----------GGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 906 0.68 0.311715
Target:  5'- aGGGguGUugGUcggcauugcgcccucGUaGCGUGCGCCGCGCUa -3'
miRNA:   3'- -UCCguCA--UA---------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 43433 0.69 0.293917
Target:  5'- cGGGuCGGgcUGacggacGCGCGCAUCGCGCg -3'
miRNA:   3'- -UCC-GUCauACac----CGCGCGUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 13973 0.7 0.246554
Target:  5'- cGGCGGccgGUGcGCGCGaGCUGCGCg -3'
miRNA:   3'- uCCGUCauaCAC-CGCGCgUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 48099 0.82 0.034267
Target:  5'- cAGGCGGcaaccggGcGCGCGCACCGCGCCg -3'
miRNA:   3'- -UCCGUCauaca--C-CGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 12287 0.68 0.308692
Target:  5'- cGGCAccg-GcGGCGCGCAUugcggcguccugCGCGCCa -3'
miRNA:   3'- uCCGUcauaCaCCGCGCGUG------------GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9196 0.76 0.096994
Target:  5'- cGGCAGUGUcgaucGcGGUGCGCACCgacuucgcauccaucGCGCCg -3'
miRNA:   3'- uCCGUCAUA-----CaCCGCGCGUGG---------------CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 8299 0.71 0.216731
Target:  5'- uAGGUAGgc---GGCGCGCGgggcUCGCGCCc -3'
miRNA:   3'- -UCCGUCauacaCCGCGCGU----GGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 27365 0.68 0.308692
Target:  5'- uGGuGCGGUAgccGUggaagugcccGGCGCGacgGCCGUGCCg -3'
miRNA:   3'- -UC-CGUCAUa--CA----------CCGCGCg--UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 2428 0.68 0.324028
Target:  5'- cGGCAGcGUGccuugguacGGCGCGgcgaacacCugCGCGCCg -3'
miRNA:   3'- uCCGUCaUACa--------CCGCGC--------GugGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 41637 0.74 0.137527
Target:  5'- cGGCAGauUGUcgGGCGCGgGCUGCgGCCg -3'
miRNA:   3'- uCCGUCauACA--CCGCGCgUGGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 19721 0.72 0.185073
Target:  5'- cGGCGcug-GUGGCGUGCaagACgGCGCCg -3'
miRNA:   3'- uCCGUcauaCACCGCGCG---UGgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.