miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 676 0.67 0.373382
Target:  5'- cGGUAGUGcccgugcucgGUGaGCGCG-AUCGUGCCg -3'
miRNA:   3'- uCCGUCAUa---------CAC-CGCGCgUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 2428 0.68 0.324028
Target:  5'- cGGCAGcGUGccuugguacGGCGCGgcgaacacCugCGCGCCg -3'
miRNA:   3'- uCCGUCaUACa--------CCGCGC--------GugGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 27365 0.68 0.308692
Target:  5'- uGGuGCGGUAgccGUggaagugcccGGCGCGacgGCCGUGCCg -3'
miRNA:   3'- -UC-CGUCAUa--CA----------CCGCGCg--UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 15176 0.66 0.446678
Target:  5'- cGGCAGUGcGUaGGuCGCGUucgcaauCCGCacgGCCg -3'
miRNA:   3'- uCCGUCAUaCA-CC-GCGCGu------GGCG---CGG- -5'
17171 5' -59.6 NC_004333.2 + 9466 0.67 0.364811
Target:  5'- cAGGCGcg----GGUGcCGCACCGcCGCCg -3'
miRNA:   3'- -UCCGUcauacaCCGC-GCGUGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 12287 0.68 0.308692
Target:  5'- cGGCAccg-GcGGCGCGCAUugcggcguccugCGCGCCa -3'
miRNA:   3'- uCCGUcauaCaCCGCGCGUG------------GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 8863 0.66 0.437078
Target:  5'- aAGGUAucgcGgcUGcGGCGCGguuaGCCGCGCa -3'
miRNA:   3'- -UCCGU----CauACaCCGCGCg---UGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 43433 0.69 0.293917
Target:  5'- cGGGuCGGgcUGacggacGCGCGCAUCGCGCg -3'
miRNA:   3'- -UCC-GUCauACac----CGCGCGUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 17736 0.66 0.452494
Target:  5'- uGGCcgacuccagGUGGUGCGCaagcauucaGCCGgCGCCg -3'
miRNA:   3'- uCCGucaua----CACCGCGCG---------UGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 9631 0.7 0.259405
Target:  5'- cGGCuGccgGcGGCGCGC-CUGCGCCc -3'
miRNA:   3'- uCCGuCauaCaCCGCGCGuGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 906 0.68 0.311715
Target:  5'- aGGGguGUugGUcggcauugcgcccucGUaGCGUGCGCCGCGCUa -3'
miRNA:   3'- -UCCguCA--UA---------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 44469 0.69 0.301235
Target:  5'- cGGCAGgccguUGUacCGCGCA-CGCGCCg -3'
miRNA:   3'- uCCGUCau---ACAccGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 37255 0.69 0.301235
Target:  5'- cGGCGcgcGUcGUGagcGGCGUGuCGCCGCGCUg -3'
miRNA:   3'- uCCGU---CA-UACa--CCGCGC-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 46201 0.68 0.315524
Target:  5'- cGGCGugAUccucgaacuugccGUaGCGCGCACCGCGCUc -3'
miRNA:   3'- uCCGUcaUA-------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30493 0.71 0.195145
Target:  5'- gAGGCAGUcgcuacGGCGCGCGaauucgguCCGgCGCCg -3'
miRNA:   3'- -UCCGUCAuaca--CCGCGCGU--------GGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 30381 0.67 0.356377
Target:  5'- uGGCGGgugGUGUcgcaGGCGCG-ACgGCgGCCa -3'
miRNA:   3'- uCCGUCa--UACA----CCGCGCgUGgCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 9686 0.72 0.185073
Target:  5'- cGGCAGcc---GGUGCGCaaccggccgauGCCGCGCCg -3'
miRNA:   3'- uCCGUCauacaCCGCGCG-----------UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 21945 0.72 0.177349
Target:  5'- gGGGCuaugcgcagcgaaccAGcuUGUaGCGCGCGCCGCGUCg -3'
miRNA:   3'- -UCCG---------------UCauACAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30045 0.72 0.1663
Target:  5'- cGGCGccg-GUGGCaGCGCgGCCGCGCUc -3'
miRNA:   3'- uCCGUcauaCACCG-CGCG-UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20844 0.73 0.141338
Target:  5'- gAGcGCAGgcGUGUcgacguucaGGCGCGCAgCCGCGUCg -3'
miRNA:   3'- -UC-CGUCa-UACA---------CCGCGCGU-GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.