miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 2687 0.66 0.689011
Target:  5'- ---aGCGUCGCGCcggCGGCGgccGACAg-- -3'
miRNA:   3'- acagCGCAGCGCGa--GCCGU---UUGUgac -5'
17173 3' -55.4 NC_004333.2 + 35699 0.66 0.689011
Target:  5'- aGUCGCGaaCGCGagugUCGGCucAGGCACa- -3'
miRNA:   3'- aCAGCGCa-GCGCg---AGCCG--UUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 25737 0.66 0.687912
Target:  5'- cGcCGCGuUCGCGaCggcCGGCAAgacgcuuucgaccGCGCUGa -3'
miRNA:   3'- aCaGCGC-AGCGC-Ga--GCCGUU-------------UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 1294 0.66 0.678004
Target:  5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3'
miRNA:   3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 35017 0.66 0.678004
Target:  5'- uUGcCG-GUCGCGCcgaacaccaUCGGCGugacGCGCUGu -3'
miRNA:   3'- -ACaGCgCAGCGCG---------AGCCGUu---UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 45745 0.66 0.678004
Target:  5'- -aUCGCG-CGCccGCUCGGUAggUGCa- -3'
miRNA:   3'- acAGCGCaGCG--CGAGCCGUuuGUGac -5'
17173 3' -55.4 NC_004333.2 + 24797 0.66 0.666952
Target:  5'- gGUUGCGggCaCGUUCGGCAGcuGCGCg- -3'
miRNA:   3'- aCAGCGCa-GcGCGAGCCGUU--UGUGac -5'
17173 3' -55.4 NC_004333.2 + 27484 0.66 0.666952
Target:  5'- cGUCGC--CGCGCaggguuaCGGCAAACAUg- -3'
miRNA:   3'- aCAGCGcaGCGCGa------GCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 19487 0.66 0.666952
Target:  5'- cGUCGCGgguaGCGCggcguaGGCGuAGCGCa- -3'
miRNA:   3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 25952 0.66 0.666952
Target:  5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3'
miRNA:   3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 46877 0.66 0.666952
Target:  5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3'
miRNA:   3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 17207 0.66 0.655867
Target:  5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3'
miRNA:   3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5'
17173 3' -55.4 NC_004333.2 + 32954 0.66 0.655867
Target:  5'- cGUgCGCGUCGgGCagcuuugcgacuUCGGCAuagUGCUGg -3'
miRNA:   3'- aCA-GCGCAGCgCG------------AGCCGUuu-GUGAC- -5'
17173 3' -55.4 NC_004333.2 + 30626 0.66 0.655867
Target:  5'- gGUCGUGcagcaGCGCggcaaggcgCGGCGuGCGCUGc -3'
miRNA:   3'- aCAGCGCag---CGCGa--------GCCGUuUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 44812 0.66 0.64476
Target:  5'- cGcCGCGa--CGCUCGGCGaggacauggacGACGCUGg -3'
miRNA:   3'- aCaGCGCagcGCGAGCCGU-----------UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 38548 0.66 0.633641
Target:  5'- cGUC-CGaCGCGCUCacGGCAacGACACa- -3'
miRNA:   3'- aCAGcGCaGCGCGAG--CCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 18922 0.66 0.633641
Target:  5'- --aUGCGUUGCGCaCGGCAAcuGCguACUGc -3'
miRNA:   3'- acaGCGCAGCGCGaGCCGUU--UG--UGAC- -5'
17173 3' -55.4 NC_004333.2 + 14414 0.66 0.630305
Target:  5'- cGcCGUGUCGCGCgUCuacaucgaagaggcGGCGAACGgUGc -3'
miRNA:   3'- aCaGCGCAGCGCG-AG--------------CCGUUUGUgAC- -5'
17173 3' -55.4 NC_004333.2 + 1110 0.67 0.619186
Target:  5'- cGUCGCaGUCGCGCgcgaagUCGGUgccgugcugcgcgcGAcguuGCACUGc -3'
miRNA:   3'- aCAGCG-CAGCGCG------AGCCG--------------UU----UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 6662 0.67 0.611409
Target:  5'- -nUCG-G-CGCGCUCGaGCAGGCGCg- -3'
miRNA:   3'- acAGCgCaGCGCGAGC-CGUUUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.