Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17173 | 3' | -55.4 | NC_004333.2 | + | 25737 | 0.66 | 0.687912 |
Target: 5'- cGcCGCGuUCGCGaCggcCGGCAAgacgcuuucgaccGCGCUGa -3' miRNA: 3'- aCaGCGC-AGCGC-Ga--GCCGUU-------------UGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 2687 | 0.66 | 0.689011 |
Target: 5'- ---aGCGUCGCGCcggCGGCGgccGACAg-- -3' miRNA: 3'- acagCGCAGCGCGa--GCCGU---UUGUgac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 1294 | 0.66 | 0.678004 |
Target: 5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3' miRNA: 3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 30626 | 0.66 | 0.655867 |
Target: 5'- gGUCGUGcagcaGCGCggcaaggcgCGGCGuGCGCUGc -3' miRNA: 3'- aCAGCGCag---CGCGa--------GCCGUuUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 35017 | 0.66 | 0.678004 |
Target: 5'- uUGcCG-GUCGCGCcgaacaccaUCGGCGugacGCGCUGu -3' miRNA: 3'- -ACaGCgCAGCGCG---------AGCCGUu---UGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 38548 | 0.66 | 0.633641 |
Target: 5'- cGUC-CGaCGCGCUCacGGCAacGACACa- -3' miRNA: 3'- aCAGcGCaGCGCGAG--CCGU--UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 32954 | 0.66 | 0.655867 |
Target: 5'- cGUgCGCGUCGgGCagcuuugcgacuUCGGCAuagUGCUGg -3' miRNA: 3'- aCA-GCGCAGCgCG------------AGCCGUuu-GUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 44812 | 0.66 | 0.64476 |
Target: 5'- cGcCGCGa--CGCUCGGCGaggacauggacGACGCUGg -3' miRNA: 3'- aCaGCGCagcGCGAGCCGU-----------UUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 35699 | 0.66 | 0.689011 |
Target: 5'- aGUCGCGaaCGCGagugUCGGCucAGGCACa- -3' miRNA: 3'- aCAGCGCa-GCGCg---AGCCG--UUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 14414 | 0.66 | 0.630305 |
Target: 5'- cGcCGUGUCGCGCgUCuacaucgaagaggcGGCGAACGgUGc -3' miRNA: 3'- aCaGCGCAGCGCG-AG--------------CCGUUUGUgAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 45745 | 0.66 | 0.678004 |
Target: 5'- -aUCGCG-CGCccGCUCGGUAggUGCa- -3' miRNA: 3'- acAGCGCaGCG--CGAGCCGUuuGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 27484 | 0.66 | 0.666952 |
Target: 5'- cGUCGC--CGCGCaggguuaCGGCAAACAUg- -3' miRNA: 3'- aCAGCGcaGCGCGa------GCCGUUUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 19487 | 0.66 | 0.666952 |
Target: 5'- cGUCGCGgguaGCGCggcguaGGCGuAGCGCa- -3' miRNA: 3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 25952 | 0.66 | 0.666952 |
Target: 5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3' miRNA: 3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 46877 | 0.66 | 0.666952 |
Target: 5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3' miRNA: 3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 17207 | 0.66 | 0.655867 |
Target: 5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3' miRNA: 3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 18922 | 0.66 | 0.633641 |
Target: 5'- --aUGCGUUGCGCaCGGCAAcuGCguACUGc -3' miRNA: 3'- acaGCGCAGCGCGaGCCGUU--UG--UGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 24797 | 0.66 | 0.666952 |
Target: 5'- gGUUGCGggCaCGUUCGGCAGcuGCGCg- -3' miRNA: 3'- aCAGCGCa-GcGCGAGCCGUU--UGUGac -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 25653 | 0.67 | 0.578221 |
Target: 5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3' miRNA: 3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5' |
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17173 | 3' | -55.4 | NC_004333.2 | + | 39098 | 0.67 | 0.58925 |
Target: 5'- aG-CGCGUuuuUGC-CUCGGCGAACAgCUGc -3' miRNA: 3'- aCaGCGCA---GCGcGAGCCGUUUGU-GAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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