miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 26849 1.07 0.00105
Target:  5'- cUGUCGCGUCGCGCUCGGCAAACACUGc -3'
miRNA:   3'- -ACAGCGCAGCGCGAGCCGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 30037 0.77 0.159617
Target:  5'- gUGgcagCGCGgcCGCGCUCGGCAcGCGCUu -3'
miRNA:   3'- -ACa---GCGCa-GCGCGAGCCGUuUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 3072 0.75 0.209652
Target:  5'- cGUCGCGgcggaCGCGC-CGGCGAGCGuCUa -3'
miRNA:   3'- aCAGCGCa----GCGCGaGCCGUUUGU-GAc -5'
17173 3' -55.4 NC_004333.2 + 32601 0.75 0.198666
Target:  5'- aG-CGCGcCGCGCgacgUCGGCAAACGCUu -3'
miRNA:   3'- aCaGCGCaGCGCG----AGCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 32539 0.75 0.221157
Target:  5'- cGUCGCGcggCGCGCUCGcGuCGAuCACUGc -3'
miRNA:   3'- aCAGCGCa--GCGCGAGC-C-GUUuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 28889 0.75 0.22711
Target:  5'- cG-CGCGaUCGCGCUCGGCGcaggccGGCGCa- -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGU------UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 6624 0.75 0.226508
Target:  5'- aGUCGCaGguaaucaacucgaUCGCGCUCGGCAGcGCGCUc -3'
miRNA:   3'- aCAGCG-C-------------AGCGCGAGCCGUU-UGUGAc -5'
17173 3' -55.4 NC_004333.2 + 24768 0.73 0.272639
Target:  5'- cUGUCGCG-CGCGCggaUCGGCAuGCAgUUGa -3'
miRNA:   3'- -ACAGCGCaGCGCG---AGCCGUuUGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 4167 0.73 0.286929
Target:  5'- cUGUCGCGcC-CGCUCGGUAAGgGCg- -3'
miRNA:   3'- -ACAGCGCaGcGCGAGCCGUUUgUGac -5'
17173 3' -55.4 NC_004333.2 + 23105 0.73 0.301801
Target:  5'- gGUUGCGUCG-GCUgaaCGGC-GGCACUGa -3'
miRNA:   3'- aCAGCGCAGCgCGA---GCCGuUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 45030 0.73 0.272639
Target:  5'- cG-CGCGUgGCGCUggcggCGcGCAAACGCUGa -3'
miRNA:   3'- aCaGCGCAgCGCGA-----GC-CGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 42131 0.72 0.32441
Target:  5'- cGUCGUgaaucucguacgaGUCGCuuUCGGCGAGCACg- -3'
miRNA:   3'- aCAGCG-------------CAGCGcgAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28422 0.72 0.309458
Target:  5'- --aCGUGUCGCGC-CGGUGucGCGCUGa -3'
miRNA:   3'- acaGCGCAGCGCGaGCCGUu-UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 20577 0.71 0.358483
Target:  5'- cGUCGgGUCGCGCcgugguguuUCuGCAGGCGCg- -3'
miRNA:   3'- aCAGCgCAGCGCG---------AGcCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 41350 0.71 0.370677
Target:  5'- gUGUaCGUGUgGCGCUCGagcacgcgcccgaccGCAAGCACUu -3'
miRNA:   3'- -ACA-GCGCAgCGCGAGC---------------CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 37277 0.71 0.384956
Target:  5'- ---aGCGUCGCGCggaacUCGGCAccGGCGCg- -3'
miRNA:   3'- acagCGCAGCGCG-----AGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 27314 0.71 0.367164
Target:  5'- cGagGCGUCgGCGCa-GGCAGACGCUc -3'
miRNA:   3'- aCagCGCAG-CGCGagCCGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 36329 0.71 0.358483
Target:  5'- gUGUCGCugcauGUCGUgGCUCGGCGAGguCUa -3'
miRNA:   3'- -ACAGCG-----CAGCG-CGAGCCGUUUguGAc -5'
17173 3' -55.4 NC_004333.2 + 43659 0.71 0.367164
Target:  5'- uUGcUCGCGcacUCGCGUUCgaGGCGAGCGCg- -3'
miRNA:   3'- -AC-AGCGC---AGCGCGAG--CCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 9194 0.71 0.367164
Target:  5'- cGU-GCGUuaCGUGCUCGGCGgcGACAUUGc -3'
miRNA:   3'- aCAgCGCA--GCGCGAGCCGU--UUGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.