miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 348 0.68 0.523919
Target:  5'- cGUCGcCGUgacCGUGCUCGGCGgcGugACg- -3'
miRNA:   3'- aCAGC-GCA---GCGCGAGCCGU--UugUGac -5'
17173 3' -55.4 NC_004333.2 + 465 0.69 0.502731
Target:  5'- -aUCGCGcgcucuaCGCGCUCGGC-AACuCUGu -3'
miRNA:   3'- acAGCGCa------GCGCGAGCCGuUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 677 0.67 0.611409
Target:  5'- gGUaGUGccCGUGCUCGGUGAGCGCg- -3'
miRNA:   3'- aCAgCGCa-GCGCGAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 1110 0.67 0.619186
Target:  5'- cGUCGCaGUCGCGCgcgaagUCGGUgccgugcugcgcgcGAcguuGCACUGc -3'
miRNA:   3'- aCAGCG-CAGCGCG------AGCCG--------------UU----UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 1294 0.66 0.678004
Target:  5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3'
miRNA:   3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5'
17173 3' -55.4 NC_004333.2 + 1565 0.68 0.567238
Target:  5'- cGUCGC-UCGCGCaguUCGaGCAAAU-CUGg -3'
miRNA:   3'- aCAGCGcAGCGCG---AGC-CGUUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 2075 0.69 0.492277
Target:  5'- cGUCGgGcaucaucCGCGC-CGGCGuAACGCUGa -3'
miRNA:   3'- aCAGCgCa------GCGCGaGCCGU-UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 2687 0.66 0.689011
Target:  5'- ---aGCGUCGCGCcggCGGCGgccGACAg-- -3'
miRNA:   3'- acagCGCAGCGCGa--GCCGU---UUGUgac -5'
17173 3' -55.4 NC_004333.2 + 3072 0.75 0.209652
Target:  5'- cGUCGCGgcggaCGCGC-CGGCGAGCGuCUa -3'
miRNA:   3'- aCAGCGCa----GCGCGaGCCGUUUGU-GAc -5'
17173 3' -55.4 NC_004333.2 + 4167 0.73 0.286929
Target:  5'- cUGUCGCGcC-CGCUCGGUAAGgGCg- -3'
miRNA:   3'- -ACAGCGCaGcGCGAGCCGUUUgUGac -5'
17173 3' -55.4 NC_004333.2 + 6624 0.75 0.226508
Target:  5'- aGUCGCaGguaaucaacucgaUCGCGCUCGGCAGcGCGCUc -3'
miRNA:   3'- aCAGCG-C-------------AGCGCGAGCCGUU-UGUGAc -5'
17173 3' -55.4 NC_004333.2 + 6662 0.67 0.611409
Target:  5'- -nUCG-G-CGCGCUCGaGCAGGCGCg- -3'
miRNA:   3'- acAGCgCaGCGCGAGC-CGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 8693 0.67 0.600316
Target:  5'- -cUCGaCGUCGCGCaUCGGCuucguGCAUc- -3'
miRNA:   3'- acAGC-GCAGCGCG-AGCCGuu---UGUGac -5'
17173 3' -55.4 NC_004333.2 + 9194 0.71 0.367164
Target:  5'- cGU-GCGUuaCGUGCUCGGCGgcGACAUUGc -3'
miRNA:   3'- aCAgCGCA--GCGCGAGCCGU--UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 10197 0.67 0.58925
Target:  5'- aGUCGCGcaCGCGCaugcggccgUCGGCAucaaaGCUGc -3'
miRNA:   3'- aCAGCGCa-GCGCG---------AGCCGUuug--UGAC- -5'
17173 3' -55.4 NC_004333.2 + 11905 0.67 0.600316
Target:  5'- cGUCGCGgcccggcaUGCGCagCGGCGcGCGCg- -3'
miRNA:   3'- aCAGCGCa-------GCGCGa-GCCGUuUGUGac -5'
17173 3' -55.4 NC_004333.2 + 12408 0.69 0.471679
Target:  5'- ---aGUGUCGcCGCcuUCGGCcAAGCGCUGg -3'
miRNA:   3'- acagCGCAGC-GCG--AGCCG-UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 13876 0.69 0.471679
Target:  5'- cGcCGCGcCGCGCgaagUCGGCcGGCACg- -3'
miRNA:   3'- aCaGCGCaGCGCG----AGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 14414 0.66 0.630305
Target:  5'- cGcCGUGUCGCGCgUCuacaucgaagaggcGGCGAACGgUGc -3'
miRNA:   3'- aCaGCGCAGCGCG-AG--------------CCGUUUGUgAC- -5'
17173 3' -55.4 NC_004333.2 + 15463 0.67 0.600316
Target:  5'- gGUCGaucggCGCGCUUGGCGugccgAGCGCa- -3'
miRNA:   3'- aCAGCgca--GCGCGAGCCGU-----UUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.