miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17173 3' -55.4 NC_004333.2 + 12408 0.69 0.471679
Target:  5'- ---aGUGUCGcCGCcuUCGGCcAAGCGCUGg -3'
miRNA:   3'- acagCGCAGC-GCG--AGCCG-UUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 45030 0.73 0.272639
Target:  5'- cG-CGCGUgGCGCUggcggCGcGCAAACGCUGa -3'
miRNA:   3'- aCaGCGCAgCGCGA-----GC-CGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 35699 0.66 0.689011
Target:  5'- aGUCGCGaaCGCGagugUCGGCucAGGCACa- -3'
miRNA:   3'- aCAGCGCa-GCGCg---AGCCG--UUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 44812 0.66 0.64476
Target:  5'- cGcCGCGa--CGCUCGGCGaggacauggacGACGCUGg -3'
miRNA:   3'- aCaGCGCagcGCGAGCCGU-----------UUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 28043 0.68 0.534641
Target:  5'- gUGUCGC-UCGUGaUCGGCGuaAGCACg- -3'
miRNA:   3'- -ACAGCGcAGCGCgAGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 28889 0.75 0.22711
Target:  5'- cG-CGCGaUCGCGCUCGGCGcaggccGGCGCa- -3'
miRNA:   3'- aCaGCGC-AGCGCGAGCCGU------UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 38548 0.66 0.633641
Target:  5'- cGUC-CGaCGCGCUCacGGCAacGACACa- -3'
miRNA:   3'- aCAGcGCaGCGCGAG--CCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 6624 0.75 0.226508
Target:  5'- aGUCGCaGguaaucaacucgaUCGCGCUCGGCAGcGCGCUc -3'
miRNA:   3'- aCAGCG-C-------------AGCGCGAGCCGUU-UGUGAc -5'
17173 3' -55.4 NC_004333.2 + 32539 0.75 0.221157
Target:  5'- cGUCGCGcggCGCGCUCGcGuCGAuCACUGc -3'
miRNA:   3'- aCAGCGCa--GCGCGAGC-C-GUUuGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 37897 0.68 0.534641
Target:  5'- cUGcUCGCGauUCGCGCucUCGGC-GACGCa- -3'
miRNA:   3'- -AC-AGCGC--AGCGCG--AGCCGuUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 35017 0.66 0.678004
Target:  5'- uUGcCG-GUCGCGCcgaacaccaUCGGCGugacGCGCUGu -3'
miRNA:   3'- -ACaGCgCAGCGCG---------AGCCGUu---UGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 41350 0.71 0.370677
Target:  5'- gUGUaCGUGUgGCGCUCGagcacgcgcccgaccGCAAGCACUu -3'
miRNA:   3'- -ACA-GCGCAgCGCGAGC---------------CGUUUGUGAc -5'
17173 3' -55.4 NC_004333.2 + 23105 0.73 0.301801
Target:  5'- gGUUGCGUCG-GCUgaaCGGC-GGCACUGa -3'
miRNA:   3'- aCAGCGCAGCgCGA---GCCGuUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 677 0.67 0.611409
Target:  5'- gGUaGUGccCGUGCUCGGUGAGCGCg- -3'
miRNA:   3'- aCAgCGCa-GCGCGAGCCGUUUGUGac -5'
17173 3' -55.4 NC_004333.2 + 30626 0.66 0.655867
Target:  5'- gGUCGUGcagcaGCGCggcaaggcgCGGCGuGCGCUGc -3'
miRNA:   3'- aCAGCGCag---CGCGa--------GCCGUuUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 1565 0.68 0.567238
Target:  5'- cGUCGC-UCGCGCaguUCGaGCAAAU-CUGg -3'
miRNA:   3'- aCAGCGcAGCGCG---AGC-CGUUUGuGAC- -5'
17173 3' -55.4 NC_004333.2 + 25653 0.67 0.578221
Target:  5'- cGUCGC--UGCGU--GGCAGGCGCUGu -3'
miRNA:   3'- aCAGCGcaGCGCGagCCGUUUGUGAC- -5'
17173 3' -55.4 NC_004333.2 + 37277 0.71 0.384956
Target:  5'- ---aGCGUCGCGCggaacUCGGCAccGGCGCg- -3'
miRNA:   3'- acagCGCAGCGCG-----AGCCGU--UUGUGac -5'
17173 3' -55.4 NC_004333.2 + 22615 0.7 0.441628
Target:  5'- cG-CGCGcUCGuCGCUCGGCAAcauCACg- -3'
miRNA:   3'- aCaGCGC-AGC-GCGAGCCGUUu--GUGac -5'
17173 3' -55.4 NC_004333.2 + 45992 0.7 0.422208
Target:  5'- -cUCGCGcaaCGCggccaGCUCGGCAAGCACc- -3'
miRNA:   3'- acAGCGCa--GCG-----CGAGCCGUUUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.