miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17174 5' -59.8 NC_004333.2 + 1848 0.7 0.233151
Target:  5'- aGUGuGCAGGCCG-GUgUCGUGCGGUu -3'
miRNA:   3'- cCGC-CGUCUGGCaCGaAGCGCGCCAu -5'
17174 5' -59.8 NC_004333.2 + 2132 0.66 0.425251
Target:  5'- aGGaCGGUuacACCGgGCUcuaUCGCGCGGg- -3'
miRNA:   3'- -CC-GCCGuc-UGGCaCGA---AGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 2887 0.66 0.438478
Target:  5'- aGCGGCgAGGCugauguuggccgagaCGUGCUgCGCaGCGGUc -3'
miRNA:   3'- cCGCCG-UCUG---------------GCACGAaGCG-CGCCAu -5'
17174 5' -59.8 NC_004333.2 + 3313 0.68 0.312377
Target:  5'- cGGCGGCGcGCgGUugaauuaaacuaucGCUUCGCGCGa-- -3'
miRNA:   3'- -CCGCCGUcUGgCA--------------CGAAGCGCGCcau -5'
17174 5' -59.8 NC_004333.2 + 3929 0.71 0.221432
Target:  5'- cGGCGGCAGGCCGaccgGCaggUUgGCGCcguucugcaGGUAg -3'
miRNA:   3'- -CCGCCGUCUGGCa---CG---AAgCGCG---------CCAU- -5'
17174 5' -59.8 NC_004333.2 + 4655 0.69 0.264735
Target:  5'- uGGCgacgGGCAGGCCGg----CGCGCGGg- -3'
miRNA:   3'- -CCG----CCGUCUGGCacgaaGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 4933 0.68 0.330168
Target:  5'- cGGCGGCAGcggcAUCG-GCacggCGCGCGcGUAc -3'
miRNA:   3'- -CCGCCGUC----UGGCaCGaa--GCGCGC-CAU- -5'
17174 5' -59.8 NC_004333.2 + 5044 0.66 0.425251
Target:  5'- aGGCGGCcGGCUGUugGCcgacgUCGgCGCGGc- -3'
miRNA:   3'- -CCGCCGuCUGGCA--CGa----AGC-GCGCCau -5'
17174 5' -59.8 NC_004333.2 + 5558 0.68 0.330168
Target:  5'- uGGCGcgaguGCAGACCGUucaGCUcgaUUGUGCGGc- -3'
miRNA:   3'- -CCGC-----CGUCUGGCA---CGA---AGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 6662 0.69 0.271454
Target:  5'- gGGCGGCGcGCCGUgGCggCGaUGCGGg- -3'
miRNA:   3'- -CCGCCGUcUGGCA-CGaaGC-GCGCCau -5'
17174 5' -59.8 NC_004333.2 + 9538 0.71 0.194318
Target:  5'- cGGCGGCGGugCG-GCaccCGCGCcuGGUGc -3'
miRNA:   3'- -CCGCCGUCugGCaCGaa-GCGCG--CCAU- -5'
17174 5' -59.8 NC_004333.2 + 9993 0.66 0.415949
Target:  5'- cGCGGC-GACC-UGC-UCGUGUGGg- -3'
miRNA:   3'- cCGCCGuCUGGcACGaAGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 13627 0.77 0.076403
Target:  5'- cGGCGaGCAcuUCGUGCaUCGCGCGGUAc -3'
miRNA:   3'- -CCGC-CGUcuGGCACGaAGCGCGCCAU- -5'
17174 5' -59.8 NC_004333.2 + 13960 0.68 0.330168
Target:  5'- cGC-GCAGcCCGUGCcggccgacUUCGCGCGGc- -3'
miRNA:   3'- cCGcCGUCuGGCACG--------AAGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 13970 0.68 0.346237
Target:  5'- aGGCGGCGGcCgGUGCgcgcgagcugCGCGCGc-- -3'
miRNA:   3'- -CCGCCGUCuGgCACGaa--------GCGCGCcau -5'
17174 5' -59.8 NC_004333.2 + 17305 0.68 0.330168
Target:  5'- cGCgGGCAGGCCG-GCUUUGCcuugcaguaGCGGc- -3'
miRNA:   3'- cCG-CCGUCUGGCaCGAAGCG---------CGCCau -5'
17174 5' -59.8 NC_004333.2 + 18808 0.67 0.352819
Target:  5'- cGCGGCcgcaGGGCgCGUGCUgcuaucgaagccCGCGCGGc- -3'
miRNA:   3'- cCGCCG----UCUG-GCACGAa-----------GCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 20574 0.74 0.133363
Target:  5'- cGGCGGCGG-CCGgcaGCggUUGCGCGGc- -3'
miRNA:   3'- -CCGCCGUCuGGCa--CGa-AGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 20944 0.69 0.278309
Target:  5'- cGGCGGCuacgccacGGGCCGgacGCaaacgCGCGCGGc- -3'
miRNA:   3'- -CCGCCG--------UCUGGCa--CGaa---GCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 22051 0.7 0.245388
Target:  5'- gGGCGGaCAGAUCGUGCacgGCGCGu-- -3'
miRNA:   3'- -CCGCC-GUCUGGCACGaagCGCGCcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.