Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17174 | 5' | -59.8 | NC_004333.2 | + | 3313 | 0.68 | 0.312377 |
Target: 5'- cGGCGGCGcGCgGUugaauuaaacuaucGCUUCGCGCGa-- -3' miRNA: 3'- -CCGCCGUcUGgCA--------------CGAAGCGCGCcau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 27198 | 1.08 | 0.000365 |
Target: 5'- uGGCGGCAGACCGUGCUUCGCGCGGUAc -3' miRNA: 3'- -CCGCCGUCUGGCACGAAGCGCGCCAU- -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 13627 | 0.77 | 0.076403 |
Target: 5'- cGGCGaGCAcuUCGUGCaUCGCGCGGUAc -3' miRNA: 3'- -CCGC-CGUcuGGCACGaAGCGCGCCAU- -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 3929 | 0.71 | 0.221432 |
Target: 5'- cGGCGGCAGGCCGaccgGCaggUUgGCGCcguucugcaGGUAg -3' miRNA: 3'- -CCGCCGUCUGGCa---CG---AAgCGCG---------CCAU- -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 1848 | 0.7 | 0.233151 |
Target: 5'- aGUGuGCAGGCCG-GUgUCGUGCGGUu -3' miRNA: 3'- cCGC-CGUCUGGCaCGaAGCGCGCCAu -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 41634 | 0.7 | 0.239204 |
Target: 5'- uGGCGGCAGAUUGU-Cgg-GCGCGGg- -3' miRNA: 3'- -CCGCCGUCUGGCAcGaagCGCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 22051 | 0.7 | 0.245388 |
Target: 5'- gGGCGGaCAGAUCGUGCacgGCGCGu-- -3' miRNA: 3'- -CCGCC-GUCUGGCACGaagCGCGCcau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 4655 | 0.69 | 0.264735 |
Target: 5'- uGGCgacgGGCAGGCCGg----CGCGCGGg- -3' miRNA: 3'- -CCG----CCGUCUGGCacgaaGCGCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 20944 | 0.69 | 0.278309 |
Target: 5'- cGGCGGCuacgccacGGGCCGgacGCaaacgCGCGCGGc- -3' miRNA: 3'- -CCGCCG--------UCUGGCa--CGaa---GCGCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 2887 | 0.66 | 0.438478 |
Target: 5'- aGCGGCgAGGCugauguuggccgagaCGUGCUgCGCaGCGGUc -3' miRNA: 3'- cCGCCG-UCUG---------------GCACGAaGCG-CGCCAu -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 25428 | 0.66 | 0.415949 |
Target: 5'- cGGCGGCGG-CCGUcacGCcgggCGUGcCGGUu -3' miRNA: 3'- -CCGCCGUCuGGCA---CGaa--GCGC-GCCAu -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 30961 | 0.67 | 0.395038 |
Target: 5'- cGGCGGCcgucaAGcgcgacuccauaaaGCCcUGCUguugcgggcugcUCGCGCGGUAg -3' miRNA: 3'- -CCGCCG-----UC--------------UGGcACGA------------AGCGCGCCAU- -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 5558 | 0.68 | 0.330168 |
Target: 5'- uGGCGcgaguGCAGACCGUucaGCUcgaUUGUGCGGc- -3' miRNA: 3'- -CCGC-----CGUCUGGCA---CGA---AGCGCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 5044 | 0.66 | 0.425251 |
Target: 5'- aGGCGGCcGGCUGUugGCcgacgUCGgCGCGGc- -3' miRNA: 3'- -CCGCCGuCUGGCA--CGa----AGC-GCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 13970 | 0.68 | 0.346237 |
Target: 5'- aGGCGGCGGcCgGUGCgcgcgagcugCGCGCGc-- -3' miRNA: 3'- -CCGCCGUCuGgCACGaa--------GCGCGCcau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 23121 | 0.67 | 0.371374 |
Target: 5'- cGGCGGC--ACUGaUGUUgCGCGCGGa- -3' miRNA: 3'- -CCGCCGucUGGC-ACGAaGCGCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 30408 | 0.66 | 0.425251 |
Target: 5'- cGGCGcCGGACCGaa-UUCGCGCGccGUAg -3' miRNA: 3'- -CCGCcGUCUGGCacgAAGCGCGC--CAU- -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 18808 | 0.67 | 0.352819 |
Target: 5'- cGCGGCcgcaGGGCgCGUGCUgcuaucgaagccCGCGCGGc- -3' miRNA: 3'- cCGCCG----UCUG-GCACGAa-----------GCGCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 22179 | 0.67 | 0.354479 |
Target: 5'- cGGCGGCGG-CCGgcgGCgguUCG-GCGGc- -3' miRNA: 3'- -CCGCCGUCuGGCa--CGa--AGCgCGCCau -5' |
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17174 | 5' | -59.8 | NC_004333.2 | + | 28229 | 0.69 | 0.299701 |
Target: 5'- gGGCGcgucacGguGACCGUGaCgcgCGCGCGGc- -3' miRNA: 3'- -CCGC------CguCUGGCAC-Gaa-GCGCGCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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