miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17180 5' -58.4 NC_004333.2 + 29139 1.06 0.000615
Target:  5'- cAUCCGCCAUCGCAUCGGCGUAGCCGAc -3'
miRNA:   3'- -UAGGCGGUAGCGUAGCCGCAUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 14293 0.73 0.180383
Target:  5'- --aCGCCGUCGCAUgGGUcUGGUCGAa -3'
miRNA:   3'- uagGCGGUAGCGUAgCCGcAUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 6685 0.71 0.243722
Target:  5'- cAUCCGCCGcuucacgugcggggCGCAUUGGCGacgAGCCa- -3'
miRNA:   3'- -UAGGCGGUa-------------GCGUAGCCGCa--UCGGcu -5'
17180 5' -58.4 NC_004333.2 + 18419 0.71 0.253964
Target:  5'- --aCGCC-UCGCgAUCGGCGgcGUCGAc -3'
miRNA:   3'- uagGCGGuAGCG-UAGCCGCauCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 5416 0.7 0.288252
Target:  5'- uUCUGCCAUCGCggCaGCGUcGUCGGc -3'
miRNA:   3'- uAGGCGGUAGCGuaGcCGCAuCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 20591 0.7 0.295532
Target:  5'- -gCCGCCAgcgaGCGgcgCGGCGgcGGCCGGc -3'
miRNA:   3'- uaGGCGGUag--CGUa--GCCGCa-UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 7941 0.7 0.302954
Target:  5'- -gCCGCUGUCGcCGUCGGacgaGUAGUCGc -3'
miRNA:   3'- uaGGCGGUAGC-GUAGCCg---CAUCGGCu -5'
17180 5' -58.4 NC_004333.2 + 44643 0.7 0.302954
Target:  5'- -gCCGaCCAUCGCGUCGGU---GUCGAu -3'
miRNA:   3'- uaGGC-GGUAGCGUAGCCGcauCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 23891 0.69 0.310518
Target:  5'- -gCCGCCGUU-CAUCGuGCGgaAGCCGAa -3'
miRNA:   3'- uaGGCGGUAGcGUAGC-CGCa-UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 28890 0.69 0.318226
Target:  5'- --gCGCgAUCGCGcUCGGCGcaGGCCGGc -3'
miRNA:   3'- uagGCGgUAGCGU-AGCCGCa-UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 12752 0.69 0.318226
Target:  5'- gAUCCaGUUGUCGCuguUCGGCGcGGUCGAc -3'
miRNA:   3'- -UAGG-CGGUAGCGu--AGCCGCaUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 38242 0.69 0.318226
Target:  5'- -gCgGCCAUUGCGagCGGCGUgccaagaucggcGGCCGGg -3'
miRNA:   3'- uaGgCGGUAGCGUa-GCCGCA------------UCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 2868 0.69 0.350482
Target:  5'- cGUUCGCgaacgaCGUCGCAgCGGCGaGGCUGAu -3'
miRNA:   3'- -UAGGCG------GUAGCGUaGCCGCaUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 22508 0.68 0.358901
Target:  5'- -gUCGCCAUCGCGuuccUCGGCGgu-CUGAu -3'
miRNA:   3'- uaGGCGGUAGCGU----AGCCGCaucGGCU- -5'
17180 5' -58.4 NC_004333.2 + 1632 0.68 0.36746
Target:  5'- aAUgCGUCGUCGg--CGGCGUAGCCc- -3'
miRNA:   3'- -UAgGCGGUAGCguaGCCGCAUCGGcu -5'
17180 5' -58.4 NC_004333.2 + 18576 0.68 0.36746
Target:  5'- -gCCGCUgcagcGUC-CGUCGGCGU-GCCGGc -3'
miRNA:   3'- uaGGCGG-----UAGcGUAGCCGCAuCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 7347 0.68 0.376159
Target:  5'- cGUUCGCCGUCGCGcagagaUCGGCGUcuaaucgucaGGCg-- -3'
miRNA:   3'- -UAGGCGGUAGCGU------AGCCGCA----------UCGgcu -5'
17180 5' -58.4 NC_004333.2 + 5474 0.68 0.384996
Target:  5'- ---aGCCAcuUCGCuUCGGCGUAGaCGAc -3'
miRNA:   3'- uaggCGGU--AGCGuAGCCGCAUCgGCU- -5'
17180 5' -58.4 NC_004333.2 + 8113 0.68 0.384996
Target:  5'- -gCCGCCGagCuCGUCGGCG-AGUCGAa -3'
miRNA:   3'- uaGGCGGUa-GcGUAGCCGCaUCGGCU- -5'
17180 5' -58.4 NC_004333.2 + 35906 0.67 0.403076
Target:  5'- -gCCGUUAUaCGCcacAUCGGCGacaGGCCGAa -3'
miRNA:   3'- uaGGCGGUA-GCG---UAGCCGCa--UCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.