Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17180 | 5' | -58.4 | NC_004333.2 | + | 1281 | 0.66 | 0.493712 |
Target: 5'- -gCCGCCuggCGCGcguugcguuacgcgaUCGGCGUgaauugcAGCUGAu -3' miRNA: 3'- uaGGCGGua-GCGU---------------AGCCGCA-------UCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 1632 | 0.68 | 0.36746 |
Target: 5'- aAUgCGUCGUCGg--CGGCGUAGCCc- -3' miRNA: 3'- -UAgGCGGUAGCguaGCCGCAUCGGcu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 2280 | 0.66 | 0.470373 |
Target: 5'- cGUuuGCCGUCGgcaaGUCGuguacCGUGGCCGGc -3' miRNA: 3'- -UAggCGGUAGCg---UAGCc----GCAUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 2384 | 0.67 | 0.421685 |
Target: 5'- uUCCGCCAguucaaCGCG--GGCGU-GCCGGc -3' miRNA: 3'- uAGGCGGUa-----GCGUagCCGCAuCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 2672 | 0.66 | 0.489614 |
Target: 5'- --aCGCCggcagcuugcagcGUCGCGcCGGCGgcGGCCGAc -3' miRNA: 3'- uagGCGG-------------UAGCGUaGCCGCa-UCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 2868 | 0.69 | 0.350482 |
Target: 5'- cGUUCGCgaacgaCGUCGCAgCGGCGaGGCUGAu -3' miRNA: 3'- -UAGGCG------GUAGCGUaGCCGCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 3915 | 0.66 | 0.511298 |
Target: 5'- --gCGCCAggcgGCAgCGGCGgcaGGCCGAc -3' miRNA: 3'- uagGCGGUag--CGUaGCCGCa--UCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 4934 | 0.66 | 0.511298 |
Target: 5'- cAUCgCGCCGUacUGCGUCugguuguaccagGGCGcaaUGGCCGAg -3' miRNA: 3'- -UAG-GCGGUA--GCGUAG------------CCGC---AUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 5416 | 0.7 | 0.288252 |
Target: 5'- uUCUGCCAUCGCggCaGCGUcGUCGGc -3' miRNA: 3'- uAGGCGGUAGCGuaGcCGCAuCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 5474 | 0.68 | 0.384996 |
Target: 5'- ---aGCCAcuUCGCuUCGGCGUAGaCGAc -3' miRNA: 3'- uaggCGGU--AGCGuAGCCGCAUCgGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 6685 | 0.71 | 0.243722 |
Target: 5'- cAUCCGCCGcuucacgugcggggCGCAUUGGCGacgAGCCa- -3' miRNA: 3'- -UAGGCGGUa-------------GCGUAGCCGCa--UCGGcu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 7347 | 0.68 | 0.376159 |
Target: 5'- cGUUCGCCGUCGCGcagagaUCGGCGUcuaaucgucaGGCg-- -3' miRNA: 3'- -UAGGCGGUAGCGU------AGCCGCA----------UCGgcu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 7866 | 0.66 | 0.484514 |
Target: 5'- cGUCCGCgcucggccuggCGaaguuccugaacggcUCGUAcuuguUCGGCGUGGCCGGc -3' miRNA: 3'- -UAGGCG-----------GU---------------AGCGU-----AGCCGCAUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 7941 | 0.7 | 0.302954 |
Target: 5'- -gCCGCUGUCGcCGUCGGacgaGUAGUCGc -3' miRNA: 3'- uaGGCGGUAGC-GUAGCCg---CAUCGGCu -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 8113 | 0.68 | 0.384996 |
Target: 5'- -gCCGCCGagCuCGUCGGCG-AGUCGAa -3' miRNA: 3'- uaGGCGGUa-GcGUAGCCGCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 11695 | 0.67 | 0.421685 |
Target: 5'- uAUCCGUCGaCGCAgcgccgggCGGCGU-GCUGGc -3' miRNA: 3'- -UAGGCGGUaGCGUa-------GCCGCAuCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 12752 | 0.69 | 0.318226 |
Target: 5'- gAUCCaGUUGUCGCuguUCGGCGcGGUCGAc -3' miRNA: 3'- -UAGG-CGGUAGCGu--AGCCGCaUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 14293 | 0.73 | 0.180383 |
Target: 5'- --aCGCCGUCGCAUgGGUcUGGUCGAa -3' miRNA: 3'- uagGCGGUAGCGUAgCCGcAUCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 18419 | 0.71 | 0.253964 |
Target: 5'- --aCGCC-UCGCgAUCGGCGgcGUCGAc -3' miRNA: 3'- uagGCGGuAGCG-UAGCCGCauCGGCU- -5' |
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17180 | 5' | -58.4 | NC_004333.2 | + | 18492 | 0.66 | 0.480453 |
Target: 5'- -cCCGCCGUUGC--CGGCac-GCCGAc -3' miRNA: 3'- uaGGCGGUAGCGuaGCCGcauCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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